PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10024931m | ||||||||
Common Name | CARUB_v10024931mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | G2-like | ||||||||
Protein Properties | Length: 194aa MW: 20892.6 Da PI: 9.0624 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 80.1 | 2.7e-25 | 17 | 69 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 p l+Wtp+LH+rFv+av++L G+++ +P+ti++lm+v+gLt+e+v+ HLQ YRl Carubv10024931m 17 PCLVWTPQLHKRFVDAVAHL-GIKNEVPQTIMQLMSVDGLTRENVANHLQNYRL 69 5689****************.9*******************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.05E-16 | 13 | 73 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-25 | 15 | 74 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-19 | 19 | 69 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.7E-7 | 20 | 68 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
LGSGAAGDEP ARTLKRPCLV WTPQLHKRFV DAVAHLGIKN EVPQTIMQLM SVDGLTRENV 60 ANHLQNYRLY LKRMQGLSSG GGAGSDPAID RLFASSPASA HFLHPNRVPS SDNFMPSFVL 120 VATLQQQQQM AAAANPHLQP PQFYHRQIAA AHIGSPTNGG FHSPTIGNYA EDLESANANG 180 GRTVLTLFPT RDY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 7e-30 | 16 | 72 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10024931m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006298091.1 | 1e-98 | transcription factor MYBC1 | ||||
Swissprot | O22210 | 7e-48 | MYBC1_ARATH; Transcription factor MYBC1 | ||||
TrEMBL | R0HX89 | 1e-141 | R0HX89_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_006295805.1 | 1e-141 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1549 | 27 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10760.1 | 8e-93 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10024931m |
Entrez Gene | 17889952 |
Publications ? help Back to Top | |||
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