PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10024841m | ||||||||
Common Name | CARUB_v10024841mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | B3 | ||||||||
Protein Properties | Length: 124aa MW: 14229.6 Da PI: 8.2127 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31.9 | 2.4e-10 | 14 | 106 | 3 | 86 |
EE-..-HHHHTT-EE--HHH.HTT........---....--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 3 kvltpsdvlksgrlvlpkkfaeeh........ggkke..esktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 k+l++ dv k+grl lpk+ + + ++ + ++++l + d ++ s++v l+ r+ s+ yvl++GW+ + +LkegD + ++ d Carubv10024841m 14 KTLSRTDVDKHGRLHLPKSQVLSVlrkmtyatEE--RllNGIELEVLDiMKNHSYSVILKSRNPSKDYVLGTGWSALKYSLELKEGDNLKLYWD 105 8999*****************9999888776533..14478999999967779******99999999********************9999965 PP S CS B3 86 g 86 + Carubv10024841m 106 H 106 4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.15E-15 | 10 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.52E-14 | 11 | 114 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 3.6E-12 | 11 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 4.2E-10 | 12 | 117 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MEGLRLDGDM IISKTLSRTD VDKHGRLHLP KSQVLSVLRK MTYATEERLL NGIELEVLDI 60 MKNHSYSVIL KSRNPSKDYV LGTGWSALKY SLELKEGDNL KLYWDHLNCK FIILNCEYSL 120 IPF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10024841m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006296022.1 | 2e-67 | putative B3 domain-containing protein At2g21920 | ||||
Swissprot | Q9SJ07 | 2e-55 | Y2192_ARATH; Putative B3 domain-containing protein At2g21920 | ||||
TrEMBL | R0HTA2 | 2e-84 | R0HTA2_9BRAS; Uncharacterized protein | ||||
STRING | XP_006295722.1 | 3e-85 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15428 | 3 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08985.1 | 3e-16 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10024841m |
Entrez Gene | 17888690 |