PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10024766m
Common NameCARUB_v10024766mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 211aa    MW: 23998.1 Da    PI: 8.9927
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10024766mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.9e-054971123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ C + F++   L  H+++H
  Carubv10024766m 49 YTCSFCRREFRSAQALGGHMNVH 71
                     9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.17E-64675No hitNo description
Gene3DG3DSA:3.30.160.608.7E-44774IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.3E-54972IPR007087Zinc finger, C2H2
SMARTSM003550.00614971IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.2194976IPR007087Zinc finger, C2H2
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MKRTHLTSFS NRSTAQEEEE EGTDGDNRVI MNHYKNYEAG LIPWPPKNYT CSFCRREFRS  60
AQALGGHMNV HRRDRAKLRQ IPSWLFEPHH HIPIANPNPN FSSSTTPAHL EPPLTNQRSK  120
TTPFPSARSD LLDSTTSYGG LMVDREKKKS NVCSRELKKG VIDACHSVRC EISRGDLMNQ  180
RDDHVMGLEL GMSLRNPKQV LDLELRLGYL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A8e-134471229superman protein
2l1o_A8e-134471229Transcriptional regulator SUPERMAN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may regulate cell division and growth. {ECO:0000269|Ref.4}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10024766m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935860.0AB493586.1 Arabidopsis thaliana At2g42410 gene for hypothetical protein, partial cds, clone: RAAt2g42410.
GenBankAC0059560.0AC005956.4 Arabidopsis thaliana chromosome 2 clone MHK10 map EG05C12, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006295653.11e-158zinc finger protein 11
SwissprotQ9SLB81e-136ZFP11_ARATH; Zinc finger protein 11
TrEMBLR0G0B31e-157R0G0B3_9BRAS; Uncharacterized protein
STRINGCagra.2636s0028.1.p1e-158(Capsella grandiflora)
STRINGXP_006295653.11e-158(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM95752435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.11e-126zinc finger protein 11