PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10024732m | ||||||||
Common Name | CARUB_v10024732mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | BES1 | ||||||||
Protein Properties | Length: 95aa MW: 11053.1 Da PI: 11.6969 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 58.4 | 3.2e-18 | 33 | 67 | 22 | 56 |
DUF822 22 RRaiaakiyaGLRaqGnyklpkraDnneVlkALcr 56 Raiaak ++GLR +Gn+klpk+++nneVlkA c+ Carubv10024732m 33 ERAIAAKTFSGLRIHGNFKLPKHCENNEVLKAFCK 67 39********************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 1.3E-15 | 28 | 67 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 95 aa Download sequence Send to blast |
MRLELRSNRF NSENDDARGR HRKMMIGRTR NGERAIAAKT FSGLRIHGNF KLPKHCENNE 60 VLKAFCKLQI VTVPMNEKKR LRLIRVCLTI RNMC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 16 | 24 | ARGRHRKMM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10024732m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | R0FZJ4 | 1e-61 | R0FZJ4_9BRAS; Uncharacterized protein | ||||
STRING | XP_006295619.1 | 2e-62 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15511 | 11 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50750.1 | 2e-13 | BES1/BZR1 homolog 1 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10024732m |
Entrez Gene | 17889277 |