PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10024503m
Common NameCARUB_v10024503mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family G2-like
Protein Properties Length: 255aa    MW: 28826.8 Da    PI: 9.9054
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10024503mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1001.6e-3153106255
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      prlrWtp+LH +Fv+av++LGG+++AtPk +l++m++kgL+++hvkSHLQ+YR+
  Carubv10024503m  53 PRLRWTPDLHLSFVRAVQRLGGPHRATPKLVLQMMNLKGLSIAHVKSHLQMYRS 106
                      8****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.8E-2949107IPR009057Homeodomain-like
PROSITE profilePS5129410.82149109IPR017930Myb domain
TIGRFAMsTIGR015572.8E-2253108IPR006447Myb domain, plants
SuperFamilySSF466897.17E-1453107IPR009057Homeodomain-like
PfamPF002492.2E-954105IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MAGTSSAGKC YTWLDLNREE TVEKNNEEES SVEDEDQVTS SNNVRQYVRS NMPRLRWTPD  60
LHLSFVRAVQ RLGGPHRATP KLVLQMMNLK GLSIAHVKSH LQMYRSKKLE LSSRHEIGAF  120
MSGQRNYLMD MINSGCNPYG GDLKHVYNSK TVPSRVPNLE GNFLMRPSSW LSGLCKNNRD  180
SIENKTLPLL EIRKTINEKR VREEEVSSVK RLKSISGQLP EFGNCRQKPA DDINTMLSLS  240
LFSTSSPGRD RNIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-1754108458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-1754108458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-1754108357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-1754108357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-1754108357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-1754108357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-1754108458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-1754108458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-1754108458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-1754108458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-1754108458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-1754108458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10024503m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0746401e-149AY074640.1 Arabidopsis thaliana F14N22.7/F14N22.7 mRNA, complete cds.
GenBankAY0789381e-149AY078938.1 Arabidopsis thaliana At2g45350/F14N22.7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006295407.10.0putative Myb family transcription factor At1g14600
TrEMBLR0HSF60.0R0HSF6_9BRAS; Uncharacterized protein
STRINGXP_006295407.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42660.11e-112G2-like family protein