PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10024503m | ||||||||
Common Name | CARUB_v10024503mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | G2-like | ||||||||
Protein Properties | Length: 255aa MW: 28826.8 Da PI: 9.9054 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100 | 1.6e-31 | 53 | 106 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+av++LGG+++AtPk +l++m++kgL+++hvkSHLQ+YR+ Carubv10024503m 53 PRLRWTPDLHLSFVRAVQRLGGPHRATPKLVLQMMNLKGLSIAHVKSHLQMYRS 106 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.8E-29 | 49 | 107 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.821 | 49 | 109 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 2.8E-22 | 53 | 108 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 7.17E-14 | 53 | 107 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.2E-9 | 54 | 105 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MAGTSSAGKC YTWLDLNREE TVEKNNEEES SVEDEDQVTS SNNVRQYVRS NMPRLRWTPD 60 LHLSFVRAVQ RLGGPHRATP KLVLQMMNLK GLSIAHVKSH LQMYRSKKLE LSSRHEIGAF 120 MSGQRNYLMD MINSGCNPYG GDLKHVYNSK TVPSRVPNLE GNFLMRPSSW LSGLCKNNRD 180 SIENKTLPLL EIRKTINEKR VREEEVSSVK RLKSISGQLP EFGNCRQKPA DDINTMLSLS 240 LFSTSSPGRD RNIA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-17 | 54 | 108 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-17 | 54 | 108 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 2e-17 | 54 | 108 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-17 | 54 | 108 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-17 | 54 | 108 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-17 | 54 | 108 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-17 | 54 | 108 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-17 | 54 | 108 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-17 | 54 | 108 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-17 | 54 | 108 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-17 | 54 | 108 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-17 | 54 | 108 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10024503m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY074640 | 1e-149 | AY074640.1 Arabidopsis thaliana F14N22.7/F14N22.7 mRNA, complete cds. | |||
GenBank | AY078938 | 1e-149 | AY078938.1 Arabidopsis thaliana At2g45350/F14N22.7 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006295407.1 | 0.0 | putative Myb family transcription factor At1g14600 | ||||
TrEMBL | R0HSF6 | 0.0 | R0HSF6_9BRAS; Uncharacterized protein | ||||
STRING | XP_006295407.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM363 | 28 | 184 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42660.1 | 1e-112 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10024503m |
Entrez Gene | 17887712 |