PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10024198m | ||||||||
Common Name | CARUB_v10024198mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | ERF | ||||||||
Protein Properties | Length: 167aa MW: 17963.3 Da PI: 10.0201 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.3 | 9.4e-19 | 27 | 76 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykG+r +k +g+WvAeIr+p +kr r++lg++ t+e Aa+a++ a +l+g Carubv10024198m 27 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPEAAARAYDTAVFYLRG 76 69*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.83E-21 | 27 | 85 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.669 | 27 | 84 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.3E-38 | 27 | 90 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.58E-26 | 28 | 86 | No hit | No description |
PRINTS | PR00367 | 4.3E-9 | 28 | 39 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.0E-12 | 28 | 76 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-30 | 28 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-9 | 50 | 66 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
METGAAVTAT VTAATMGIGT RKRDLKPYKG IRMRKWGKWV AEIREPNKRS RIWLGSYSTP 60 EAAARAYDTA VFYLRGPSAR VNFPELLAGL GGGRSSGGDM TAAYIRRKAA EVGAQVDALG 120 ATVVVRSGGD YEDCRGGGNG LLDRVDLNKL PDPENSDDDD VWVKRR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-15 | 26 | 84 | 4 | 63 | ATERF1 |
3gcc_A | 2e-15 | 26 | 84 | 4 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00276 | DAP | Transfer from AT2G23340 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10024198m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC002391 | 5e-99 | AC002391.3 Arabidopsis thaliana chromosome 2 clone T20D16 map CIC06C07, complete sequence. | |||
GenBank | AK118495 | 5e-99 | AK118495.1 Arabidopsis thaliana At2g23340 mRNA for putative AP2 domain transcription factor, complete cds, clone: RAFL19-73-B20. | |||
GenBank | BT003741 | 5e-99 | BT003741.1 Arabidopsis thaliana At2g23340 mRNA, complete cds. | |||
GenBank | CP002685 | 5e-99 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006295124.1 | 1e-116 | ethylene-responsive transcription factor ERF008 | ||||
Swissprot | O22174 | 9e-86 | ERF08_ARATH; Ethylene-responsive transcription factor ERF008 | ||||
TrEMBL | R0FYD9 | 1e-115 | R0FYD9_9BRAS; Uncharacterized protein | ||||
STRING | XP_006295124.1 | 1e-116 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23340.1 | 1e-79 | DREB and EAR motif protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10024198m |
Entrez Gene | 17889335 |
Publications ? help Back to Top | |||
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