PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10024179m | ||||||||
Common Name | CARUB_v10024179mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | C2H2 | ||||||||
Protein Properties | Length: 172aa MW: 18501.3 Da PI: 10.065 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.9 | 0.0015 | 48 | 70 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F++ L H +H Carubv10024179m 48 FACKTCNKEFPSFQALGGHRASH 70 78**********99999998887 PP | |||||||
2 | zf-C2H2 | 12 | 0.00062 | 92 | 114 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg F L H+r+H Carubv10024179m 92 HECPICGAEFAVGQALGGHMRKH 114 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.76E-8 | 46 | 114 | No hit | No description |
Pfam | PF13912 | 8.0E-13 | 47 | 72 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.369 | 48 | 75 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.23 | 48 | 70 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 50 | 70 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.6E-10 | 92 | 116 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.743 | 92 | 119 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.063 | 92 | 114 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 94 | 114 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
KQSVEFSFSS FCEMERERSD MEMINKMANC LILLSKNQHQ NDTKSRVFAC KTCNKEFPSF 60 QALGGHRASH RRSAALEGHA PPSPKRVKPV KHECPICGAE FAVGQALGGH MRKHRGGAGG 120 GGGGRSLAPA TAPVTMKKSG GGNGKRVLCL DLNLTPLENE DLKLELGRLI F* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 114 | 124 | RGGAGGGGGGR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor involved in light acclimation, cold and oxidative stress responses. May regulate a collection of transcripts involved in response to high-light, cold and oxidative stress. {ECO:0000269|PubMed:11069694, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10024179m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By H(2)O(2), cold, drought, cold or heat stresses, wounding, cucumber mosaic virus (CMV), exposure to high-intensity light and low-oxygen conditions in roots. {ECO:0000269|PubMed:12368499, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833, ECO:0000269|PubMed:18201973, ECO:0000269|PubMed:18922600}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC007184 | 1e-176 | AC007184.4 Arabidopsis thaliana chromosome 2 clone T11P11 map mi54, complete sequence. | |||
GenBank | BT029330 | 1e-176 | BT029330.1 Arabidopsis thaliana At2g28710 mRNA, complete cds. | |||
GenBank | CP002685 | 1e-176 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006295104.2 | 1e-113 | zinc finger protein ZAT12 | ||||
Swissprot | Q42410 | 3e-42 | ZAT12_ARATH; Zinc finger protein ZAT12 | ||||
TrEMBL | R0FYC6 | 1e-122 | R0FYC6_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_006295104.1 | 1e-123 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM531 | 28 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 2e-91 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10024179m |
Entrez Gene | 17887734 |