PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10024148m
Common NameCARUB_v10024148mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HD-ZIP
Protein Properties Length: 183aa    MW: 21328.2 Da    PI: 9.628
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10024148mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.17.1e-1973128257
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                      +k+ ++t+eql+ Le+ F+++ +++ +++ +L+k+lgL+ rqV vWFqNr+a++k+
  Carubv10024148m  73 KKKKKMTSEQLKFLERSFQEEIKLNPDRKMKLSKELGLQPRQVAVWFQNRKARWKN 128
                      78999*************************************************95 PP

2HD-ZIP_I/II112.62.6e-3673164192
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      +kk+++++eq+k+LE+sF+ee kL+p+rK++l++eLglqprqvavWFqnr+AR+k+kqlE+ ye+L++++d +++e+e L++e  +L++ ++
  Carubv10024148m  73 KKKKKMTSEQLKFLERSFQEEIKLNPDRKMKLSKELGLQPRQVAVWFQNRKARWKNKQLEHLYESLRQEFDVVSREKELLQEELIQLKSMIR 164
                      59**************************************************************************************8876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.07E-1960131IPR009057Homeodomain-like
PROSITE profilePS5007117.44369129IPR001356Homeobox domain
SMARTSM003892.6E-1771133IPR001356Homeobox domain
PfamPF000463.1E-1673128IPR001356Homeobox domain
CDDcd000867.31E-1573130No hitNo description
Gene3DG3DSA:1.10.10.607.9E-2079129IPR009057Homeodomain-like
PRINTSPR000315.9E-5100109IPR000047Helix-turn-helix motif
PROSITE patternPS000270104127IPR017970Homeobox, conserved site
PRINTSPR000315.9E-5109125IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MEYWSSSFID GASSSNFMIS PFYNFDHFPG NDDNRCLSSG TMVGAQQGML HVPLEMVENG  60
YGEESNNING QQKKKKKMTS EQLKFLERSF QEEIKLNPDR KMKLSKELGL QPRQVAVWFQ  120
NRKARWKNKQ LEHLYESLRQ EFDVVSREKE LLQEELIQLK SMIRENGSNK KMQTWGKPAA  180
RQ*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00049PBMTransfer from AT2G36610Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10024148m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0565691e-101DQ056569.1 Arabidopsis thaliana homeobox-leucine zipper family protein (At2g36610) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006295077.11e-133homeobox-leucine zipper protein ATHB-22
SwissprotQ4PSR71e-108ATB22_ARATH; Homeobox-leucine zipper protein ATHB-22
TrEMBLR0HRP81e-132R0HRP8_9BRAS; Uncharacterized protein
STRINGXP_006295077.11e-133(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16602888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36610.11e-94homeobox protein 22
Publications ? help Back to Top
  1. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]