PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10024148m | ||||||||
Common Name | CARUB_v10024148mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 183aa MW: 21328.2 Da PI: 9.628 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.1 | 7.1e-19 | 73 | 128 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +k+ ++t+eql+ Le+ F+++ +++ +++ +L+k+lgL+ rqV vWFqNr+a++k+ Carubv10024148m 73 KKKKKMTSEQLKFLERSFQEEIKLNPDRKMKLSKELGLQPRQVAVWFQNRKARWKN 128 78999*************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 112.6 | 2.6e-36 | 73 | 164 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+++++eq+k+LE+sF+ee kL+p+rK++l++eLglqprqvavWFqnr+AR+k+kqlE+ ye+L++++d +++e+e L++e +L++ ++ Carubv10024148m 73 KKKKKMTSEQLKFLERSFQEEIKLNPDRKMKLSKELGLQPRQVAVWFQNRKARWKNKQLEHLYESLRQEFDVVSREKELLQEELIQLKSMIR 164 59**************************************************************************************8876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.07E-19 | 60 | 131 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.443 | 69 | 129 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.6E-17 | 71 | 133 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.1E-16 | 73 | 128 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.31E-15 | 73 | 130 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.9E-20 | 79 | 129 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 5.9E-5 | 100 | 109 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 104 | 127 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.9E-5 | 109 | 125 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MEYWSSSFID GASSSNFMIS PFYNFDHFPG NDDNRCLSSG TMVGAQQGML HVPLEMVENG 60 YGEESNNING QQKKKKKMTS EQLKFLERSF QEEIKLNPDR KMKLSKELGL QPRQVAVWFQ 120 NRKARWKNKQ LEHLYESLRQ EFDVVSREKE LLQEELIQLK SMIRENGSNK KMQTWGKPAA 180 RQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00049 | PBM | Transfer from AT2G36610 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10024148m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ056569 | 1e-101 | DQ056569.1 Arabidopsis thaliana homeobox-leucine zipper family protein (At2g36610) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006295077.1 | 1e-133 | homeobox-leucine zipper protein ATHB-22 | ||||
Swissprot | Q4PSR7 | 1e-108 | ATB22_ARATH; Homeobox-leucine zipper protein ATHB-22 | ||||
TrEMBL | R0HRP8 | 1e-132 | R0HRP8_9BRAS; Uncharacterized protein | ||||
STRING | XP_006295077.1 | 1e-133 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1660 | 28 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36610.1 | 1e-94 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10024148m |
Entrez Gene | 17890479 |
Publications ? help Back to Top | |||
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