PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10024141m | ||||||||
Common Name | CARUB_v10024141mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | C2H2 | ||||||||
Protein Properties | Length: 184aa MW: 20789.9 Da PI: 9.7857 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13 | 0.0003 | 49 | 71 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+Fs+ L H +H Carubv10024141m 49 FECKTCNKRFSSFQALGGHRASH 71 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 16.5 | 2.5e-05 | 99 | 121 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+sF + L H+r+H Carubv10024141m 99 HECSICGQSFGTGQALGGHMRRH 121 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 2.9E-4 | 36 | 73 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 1.5E-12 | 48 | 73 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.57E-8 | 48 | 121 | No hit | No description |
SMART | SM00355 | 0.093 | 49 | 71 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.533 | 49 | 76 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 51 | 71 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0097 | 99 | 121 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.159 | 99 | 126 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 8.2E-12 | 99 | 123 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 101 | 121 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0071289 | Biological Process | cellular response to nickel ion | ||||
GO:2000280 | Biological Process | regulation of root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MKRVRSDFEE SIKNLDIAKC LMILAQTSMA NQISLNQNQH TESHTSNRFE CKTCNKRFSS 60 FQALGGHRAS HKKPKLTTVD VEQKDVKHLS YNYKGNHSHE CSICGQSFGT GQALGGHMRR 120 HRSSIKVEPS FICPVIPTMP VLKRCSSSKR VLSLDLNLTP LENDLEYIFG KTFFPNIDMK 180 FVL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10024141m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC005896 | 1e-169 | AC005896.3 Arabidopsis thaliana chromosome 2 clone F3G5 map ve018, complete sequence. | |||
GenBank | CP002685 | 1e-169 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. | |||
GenBank | X98672 | 1e-169 | X98672.1 A.thaliana mRNA for ZAT11 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006295072.1 | 1e-136 | zinc finger protein ZAT11 | ||||
Swissprot | Q9SLD4 | 1e-112 | ZAT11_ARATH; Zinc finger protein ZAT11 | ||||
TrEMBL | R0HRP3 | 1e-134 | R0HRP3_9BRAS; Uncharacterized protein | ||||
STRING | XP_006295072.1 | 1e-135 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM531 | 28 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 1e-115 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10024141m |
Entrez Gene | 17889804 |