PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10024069m

Common Name

CARUB_v10024069mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

FAR1

Protein Properties

Length: 208aa MW: 24326.6 Da PI: 8.219

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10024069m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.3	2e-26	38	126	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++Y++++GF +r+ + ++s+++g+i r+f C+keg+ + + k + r++r++tr gCka+++vk +++gkw++tk++++HnH+l+ Carubv10024069m 38 FYDDYSRRLGFVMRVMSCRRSEKDGRILARRFGCNKEGHCVSIRGKFGSVRKPRPSTREGCKAMIHVKYDRSGKWVITKFVKDHNHPLV 126 9************************************999999989*************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.8E-24	38	126	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MEDEEDPATK NINNTDDDFA IEPREGIEFE SEDAAKMFYD DYSRRLGFVM RVMSCRRSEK 60 DGRILARRFG CNKEGHCVSI RGKFGSVRKP RPSTREGCKA MIHVKYDRSG KWVITKFVKD 120 HNHPLVVSPR EARQTLDEKD KRIQELTIEL RNKKRLCAAY REQLDAFARI IEEHSDQIAK 180 KVENVVNNLK EFEPIEHELW RNKQDAI*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10024069m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT002891	0.0	BT002891.1 Arabidopsis thaliana clone RAFL14-97-G02 (R20421) unknown protein (At2g43280) mRNA, complete cds.
GenBank	BT004409	0.0	BT004409.1 Arabidopsis thaliana clone U20421 unknown protein (At2g43280) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006294998.1	1e-153	protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	5e-25	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	R0FYQ4	1e-152	R0FYQ4_9BRAS; Uncharacterized protein
STRING	XP_006294998.1	1e-153	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3918	28	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-143	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Carubv10024069m
Entrez Gene	17890305

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]