PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10023905m | ||||||||
Common Name | CARUB_v10023905mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB | ||||||||
Protein Properties | Length: 254aa MW: 29464.8 Da PI: 5.7967 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.2 | 8.9e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd++lv++++++G +W++ +++ g+ R++k+c++rw +yl Carubv10023905m 14 RGPWTPEEDQILVNYIHLYGHSNWRALPKHAGLLRCGKSCRLRWINYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 52.9 | 8.3e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E+e ++++++ lG++ W++Ia++++ gRt++++k+ w+++l Carubv10023905m 67 RGNFTPQEEETIINLHESLGNR-WSAIAAKLP-GRTDNEIKNVWHTHL 112 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.619 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.07E-31 | 10 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.87E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-27 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.05E-9 | 69 | 112 | No hit | No description |
PROSITE pattern | PS00018 | 0 | 170 | 182 | IPR018247 | EF-Hand 1, calcium-binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MGRAPCCEKM GMKRGPWTPE EDQILVNYIH LYGHSNWRAL PKHAGLLRCG KSCRLRWINY 60 LRPDIKRGNF TPQEEETIIN LHESLGNRWS AIAAKLPGRT DNEIKNVWHT HLKKRLNKNQ 120 NNGGDTKENI NGINETTTHE DKESSMVHVV DTTSPQQFSN SITTFDISND INKDGIMSYE 180 DISALIDESF WSDVVTVDNS NHKIEDWEGT LMDRNIKRKS YNNSELYNDD MEFWFEHFTS 240 NRRIEEFSDI PEC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-26 | 12 | 117 | 5 | 109 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10023905m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY519575 | 0.0 | AY519575.1 Arabidopsis thaliana MYB transcription factor (At2g31180) mRNA, complete cds. | |||
GenBank | BT024853 | 0.0 | BT024853.1 Arabidopsis thaliana At2g31180 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006294854.1 | 0.0 | transcription factor MYB14 | ||||
Swissprot | Q9SJX8 | 1e-155 | MYB14_ARATH; Transcription factor MYB14 | ||||
TrEMBL | R0FXK4 | 0.0 | R0FXK4_9BRAS; Uncharacterized protein | ||||
STRING | XP_006294854.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 1e-157 | myb domain protein 14 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10023905m |
Entrez Gene | 17890301 |
Publications ? help Back to Top | |||
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