PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10023820m
Common NameCARUB_v10023820mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GATA
Protein Properties Length: 278aa    MW: 31131 Da    PI: 8.747
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10023820mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.61.7e-18209243135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++C tt Tp+WR+gp g ktLCnaCG+++r+ +l
  Carubv10023820m 209 CTHCETTRTPQWREGPHGRKTLCNACGVRFRSGRL 243
                      *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.8E-17203253IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.05E-14207266No hitNo description
PROSITE profilePS5011411.965207239IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.6E-15207240IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.35E-16208265No hitNo description
PROSITE patternPS003440209234IPR000679Zinc finger, GATA-type
PfamPF003201.0E-16209243IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MSNVSWLPEE DFKGLADNFF DNLIEHIDDF PLEDIETADD EEDWKTGFQN LGPPPLDVLT  60
SLPSEFTCKG QRVRVQNTVP IVKQSSSSDV SSTVDISPPD VKVSKLFQSS SPVSVLENTN  120
GSVLSQSQNR IQRLTFLVKG IRSKRKRPTT LKFFKSLGAE MSQHFVPDES KSETHLSSEN  180
SVKKKRKSPA LSISYSPELI NSDGTVRKCT HCETTRTPQW REGPHGRKTL CNACGVRFRS  240
GRLVPEYRPA SSPTFIPAVH SNSHRKIIEM RRKEEGQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10023820m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294768.10.0putative GATA transcription factor 13
SwissprotQ9SKN61e-115GAT13_ARATH; Putative GATA transcription factor 13
TrEMBLR0FY420.0R0FY42_9BRAS; Uncharacterized protein
STRINGXP_006294768.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16812589
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28340.11e-107GATA transcription factor 13