PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10023730m
Common NameCARUB_v10023730mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 301aa    MW: 34565 Da    PI: 8.2126
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10023730mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.14.1e-50431663128
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                      pGfrFhPtdeel+ +yL++kve+k+++l e ik++diyk++PwdLp+  + +ekewyfF+ r +ky+++ r+nr+t sg+Wkatg dk+v+s +
  Carubv10023730m  43 PGFRFHPTDEELLGYYLRRKVENKPIKL-ELIKQIDIYKFDPWDLPRVSSVGEKEWYFFCMRGRKYRNSVRPNRVTGSGFWKATGIDKPVYS-N 134
                      9***************************.99***************7777799***************************************.9 PP

              NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                         vglkk+Lv+y g+a kg+ktdW+mhe+rl
  Carubv10023730m 135 LDCVGLKKSLVYYLGSAGKGTKTDWMMHEFRL 166
                      999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100553.53541190IPR003441NAC domain
SuperFamilySSF1019413.01E-5642189IPR003441NAC domain
PfamPF023651.9E-2543166IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MHYGTFYVER LDWYLREIDV VKMSGEGKLG RDHHEEEGDA PLPGFRFHPT DEELLGYYLR  60
RKVENKPIKL ELIKQIDIYK FDPWDLPRVS SVGEKEWYFF CMRGRKYRNS VRPNRVTGSG  120
FWKATGIDKP VYSNLDCVGL KKSLVYYLGS AGKGTKTDWM MHEFRLPSTS KTDSPALQAE  180
VWTLCRIFKR VTSHRNPTIV PPNRKPVITL TDSCSKTSSL DSDHTSHRVV DSLPLSHEPP  240
LQPHTPYWNQ HAVGFNQPTY TCNDNNNFLS FWNVNGTGDF IGDSASWDEL RSVIDGNTKP  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-534319619171NO APICAL MERISTEM PROTEIN
1ut4_B1e-534319619171NO APICAL MERISTEM PROTEIN
1ut7_A1e-534319619171NO APICAL MERISTEM PROTEIN
1ut7_B1e-534319619171NO APICAL MERISTEM PROTEIN
3swm_A2e-534319622174NAC domain-containing protein 19
3swm_B2e-534319622174NAC domain-containing protein 19
3swm_C2e-534319622174NAC domain-containing protein 19
3swm_D2e-534319622174NAC domain-containing protein 19
3swp_A2e-534319622174NAC domain-containing protein 19
3swp_B2e-534319622174NAC domain-containing protein 19
3swp_C2e-534319622174NAC domain-containing protein 19
3swp_D2e-534319622174NAC domain-containing protein 19
4dul_A1e-534319619171NAC domain-containing protein 19
4dul_B1e-534319619171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10023730m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935870.0AB493587.1 Arabidopsis thaliana At2g43000 mRNA for hypothetical protein, partial cds, clone: RAAt2g43000.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294694.20.0transcription factor JUNGBRUNNEN 1
SwissprotQ9SK550.0NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLR0FX780.0R0FX78_9BRAS; Uncharacterized protein
STRINGXP_006294694.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.10.0NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]