PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10023699m
Common NameCARUB_v10023699mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 307aa    MW: 33468.6 Da    PI: 4.6679
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10023699mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.8e-18108157255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g
  Carubv10023699m 108 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKG 157
                      69****998.**********843...6**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.1E-38108171IPR001471AP2/ERF domain
PfamPF008471.2E-12108157IPR001471AP2/ERF domain
PROSITE profilePS5103223.222108165IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-21108165IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-31108166IPR001471AP2/ERF domain
PRINTSPR003672.7E-10109120IPR001471AP2/ERF domain
CDDcd000185.64E-32109167No hitNo description
PRINTSPR003672.7E-10131147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MSYPTSHIYF CATHLLLQSF SLITMERHIN NNIESRSVPQ ATSSLSSSPT TSSSSSSSSS  60
TNSNFPHHEE DNSKRKASRR SLAEDDDQTV GGGGGKKRKI SGGDKHPTYR GVRMRSWGKW  120
VSEIREPRKK SRIWLGTYPT AEMAARAHDV AALAIKGTTA YLNFPELSGE LPRPVTNSPK  180
DIQAAASLAA VNWQDPVNDA DDSEEAAELA EAEPSPAAVV FSSDTSTTTT TTTQSQESSE  240
ASCASTSCST DKDNEEEKLF DLPDLFADEN EMMIRNDAFC YYSSTWQLCG ADAGFRLEEP  300
FFCLND*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-17103165972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10023699m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2546050.0AC254605.1 Capsella rubella clone CAP23-M05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023640073.10.0ethylene-responsive transcription factor ERF034
SwissprotQ8LBQ71e-124ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLR0HQJ80.0R0HQJ8_9BRAS; Uncharacterized protein
STRINGXP_006294662.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.14e-96ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]