PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10023692m
Common NameCARUB_v10023692mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 309aa    MW: 32712.1 Da    PI: 6.5244
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10023692mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.71.5e-191459147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd+ll  +v+++G+++W++I++ ++ gR++k+c++rw + 
  Carubv10023692m 14 KGPWSPEEDDLLQSLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 59
                     79******************************.***********985 PP
2Myb_DNA-binding53.46.1e-1769110447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +T+eEd+ +++a++++G++ W+tIar ++ gRt++ +k++w++ 
  Carubv10023692m  69 FTAEEDDAIIRAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 110
                      8******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.612964IPR017930Myb domain
SuperFamilySSF466891.5E-3111107IPR009057Homeodomain-like
SMARTSM007173.4E-171362IPR001005SANT/Myb domain
PfamPF002491.6E-191459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-261567IPR009057Homeodomain-like
CDDcd001672.89E-161658No hitNo description
SMARTSM007172.6E-1465113IPR001005SANT/Myb domain
PROSITE profilePS5129419.6566115IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-2268114IPR009057Homeodomain-like
PfamPF002492.5E-1469110IPR001005SANT/Myb domain
CDDcd001676.30E-1269111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MTSGSTRKET DRIKGPWSPE EDDLLQSLVQ KHGPRNWSLI SKSIPGRSGK SCRLRWCNQL  60
SPEVEHRGFT AEEDDAIIRA HARFGNKWAT IARLLNGRTD NAIKNHWNST LKRKCSGGGG  120
GGEKGQSCGF GGNGGYDGNL TDEQPLKRTA SGGYSGVGVV VTALSPTGSD VSEQLSGSVI  180
PVSSSRVFKP TARAGGVVIE SSSTSEEEEK DPATCLSLSL SWVNSESTPG RRDTAELFPV  240
KREEEEEKER GINGFGGDFM TVVQEMIKTE VRSYMTDLQL GNGGGSGGRG GGGASSCMVQ  300
GSGELGSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-41131153105MYB PROTO-ONCOGENE PROTEIN
1h88_C4e-401311557159MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-401311557159MYB PROTO-ONCOGENE PROTEIN
1mse_C7e-41131153105C-Myb DNA-Binding Domain
1msf_C7e-41131153105C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1286292GGRGGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00274DAPTransfer from AT2G23290Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10023692m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0880070.0AY088007.1 Arabidopsis thaliana clone 40307 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023640288.10.0transcription factor MYB73
SwissprotO231601e-121MYB73_ARATH; Transcription factor MYB73
TrEMBLR0HDE80.0R0HDE8_9BRAS; Uncharacterized protein
STRINGXP_006294656.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67728135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.11e-132myb domain protein 70
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]