PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10023690m
Common NameCARUB_v10023690mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HD-ZIP
Protein Properties Length: 310aa    MW: 34327.1 Da    PI: 9.6468
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10023690mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.2e-18144198256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ ++tkeq  +Le+ F+ +++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  Carubv10023690m 144 RKKLRLTKEQSSRLEDSFKHHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTK 198
                      788899***********************************************98 PP
2HD-ZIP_I/II122.61.9e-39144232190
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                      +kk+rl+keq++ LE+sF+++++L+p++K+ lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e Lk+++++l++en rL+ke +eL+ +
  Carubv10023690m 144 RKKLRLTKEQSSRLEDSFKHHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEILKKCCETLTDENMRLRKEIQELK-T 232
                      69*************************************************************************************9.3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.086140200IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.4E-17141203IPR009057Homeodomain-like
SMARTSM003891.3E-15142204IPR001356Homeobox domain
SuperFamilySSF466894.71E-18142208IPR009057Homeodomain-like
CDDcd000864.33E-16144201No hitNo description
PfamPF000461.4E-15144198IPR001356Homeobox domain
PROSITE patternPS000270175198IPR017970Homeobox, conserved site
SMARTSM003407.0E-21200246IPR003106Leucine zipper, homeobox-associated
PfamPF021833.8E-10200232IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
SNPKPKKKSH FFFPLKIPKI DKIYIGKIFF IILTQMSYDD SCNSGLVLGL GLSPTPNNYN  60
NAIKRSSEYK LEPSLTLSLS GDPLLTLVAG ADQLCRQTSS LSGVSSFSSG RVVKRERYGG  120
EESPEEEETT KRVISEDEEG VSARKKLRLT KEQSSRLEDS FKHHSTLNPK QKQVLARQLN  180
LRPRQVEVWF QNRRARTKLK QTEVDCEILK KCCETLTDEN MRLRKEIQEL KTLSLTNHHQ  240
PFYMHMSTNP TLTICPSCEI IIAGGGNGGG GGGSVANTVV VDGGKTKGAF SISSKPHFFN  300
PYTNPSAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
159KKKSH
2192200RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10023690m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294654.20.0homeobox-leucine zipper protein HAT9
SwissprotP466031e-131HAT9_ARATH; Homeobox-leucine zipper protein HAT9
TrEMBLR0FX480.0R0FX48_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006294654.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16712886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22800.11e-128HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]