PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10023682m | ||||||||
Common Name | CARUB_v10023682mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 312aa MW: 35162.7 Da PI: 4.4561 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.3 | 2.6e-18 | 63 | 116 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k Carubv10023682m 63 KKRRLSINQVKALEKNFELENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 116 5568999**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 127.8 | 4.5e-41 | 62 | 154 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlEkdy +Lk+++d+l+++ ++L++++e+L +e+++ Carubv10023682m 62 EKKRRLSINQVKALEKNFELENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLEKDYGVLKTQFDSLRHNFDSLRRDNESLLQEISK 154 69*************************************************************************************999976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.908 | 58 | 118 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.92E-18 | 60 | 120 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.4E-17 | 61 | 122 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.56E-15 | 63 | 119 | No hit | No description |
Pfam | PF00046 | 1.4E-15 | 63 | 116 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-19 | 65 | 125 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 8.7E-6 | 89 | 98 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 93 | 116 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.7E-6 | 98 | 114 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.5E-16 | 118 | 159 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MKRLSSSSSD SVGGLISLCP TTSTDEQSPR RYGGREFQSM LEGYEEEEEA IVEERGHVGL 60 SEKKRRLSIN QVKALEKNFE LENKLEPERK VKLAQELGLQ PRQVAVWFQN RRARWKTKQL 120 EKDYGVLKTQ FDSLRHNFDS LRRDNESLLQ EISKLKTKLY GGGEEEEEEN NEAAEATESD 180 ISVKEEEVSL PEKITEPPSS PPQFLEHSDG LNYRSFTDLR ELLPLKAAAS SFAAAGSSDS 240 SDSSALLNEE SSSNVTVAAP VTVPVGNFFK FVKMEQTEDH DDFLSGEEAC EFFSDEQPPS 300 LHWYSTVDHW N* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 110 | 118 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that may act as growth regulators in response to water deficit. Interacts with the core sequence 5'-CAATTATTA-3' of promoters in response to ABA and in an ABI1-dependent manner. Involved in the negative regulation of the ABA signaling pathway. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00271 | DAP | Transfer from AT2G22430 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10023682m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. Self expression regulation. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416, ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY060569 | 0.0 | AY060569.1 Arabidopsis thaliana At2g22430/F14M13.17 mRNA, complete cds. | |||
GenBank | AY063819 | 0.0 | AY063819.1 Arabidopsis thaliana putative homeodomain transcription factor ATHB-6 (At2g22430) mRNA, complete cds. | |||
GenBank | AY094457 | 0.0 | AY094457.1 Arabidopsis thaliana At2g22430/F14M13.17 mRNA, complete cds. | |||
GenBank | AY122903 | 0.0 | AY122903.1 Arabidopsis thaliana At2g22430/F14M13.17 mRNA, complete cds. | |||
GenBank | X67034 | 0.0 | X67034.1 A.thaliana mRNA Athb-6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006294645.1 | 0.0 | homeobox-leucine zipper protein ATHB-6 | ||||
Swissprot | P46668 | 0.0 | ATHB6_ARATH; Homeobox-leucine zipper protein ATHB-6 | ||||
TrEMBL | R0HU11 | 0.0 | R0HU11_9BRAS; Uncharacterized protein | ||||
STRING | XP_006294645.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM545 | 28 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22430.1 | 1e-143 | homeobox protein 6 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10023682m |
Entrez Gene | 17889296 |
Publications ? help Back to Top | |||
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