PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10023601m
Common NameCARUB_v10023601mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family CO-like
Protein Properties Length: 331aa    MW: 37388 Da    PI: 6.2337
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10023601mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.54.1e-061142435
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHk 35
                     r C+ +++  +  +C+ ++  lC  C  + H 
  Carubv10023601m 11 RLCDYCDSSVALVYCKADSAKLCLACDKQVHA 42
                     78**************************9995 PP
2zf-B_box217.1e-075594541
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg...Htvvp 41
                      C+ +++ + +lfC + ++ lC++C  ++H +   H+++p
  Carubv10023601m 55 LCDSCHDSPSSLFCDTERSVLCQNCDWQHHTStslHSRRP 94
                     7***************************886688888766 PP
3CCT60.36.4e-21285328144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      R+ al+RYkeK+k+R++eK+irYesRK++AesR R++GrF+k+a
  Carubv10023601m 285 RNSALSRYKEKKKSRRYEKHIRYESRKVRAESRTRIRGRFAKAA 328
                      899***************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.338855IPR000315B-box-type zinc finger
SMARTSM003364.5E-13855IPR000315B-box-type zinc finger
CDDcd000211.53E-51155No hitNo description
PROSITE profilePS5011910.3245195IPR000315B-box-type zinc finger
CDDcd000212.46E-75594No hitNo description
SMARTSM003360.645695IPR000315B-box-type zinc finger
PROSITE profilePS5101714.743285327IPR010402CCT domain
PfamPF062038.1E-15285327IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MEDKEEGRRH RLCDYCDSSV ALVYCKADSA KLCLACDKQV HAANQLFAKH FRSLLCDSCH  60
DSPSSLFCDT ERSVLCQNCD WQHHTSTSLH SRRPFEGFSG CPSVPEFLAI LGLDDLAPDS  120
GLLLDQAPPE ILSLSDLVAS GGSATHHFRA TDVPPLPKNR HATCGKYKDE MIRQLRGLAR  180
SEPSCLKFEA TDAEIDAGFQ FLAPDLFPTC ELESGLKWFD FDQQDEDFPY CSLLRNLSES  240
DEKHENVDRN SSVMVPVSDC FNRPEEDNVV VPLCTTTREI NSLERNSALS RYKEKKKSRR  300
YEKHIRYESR KVRAESRTRI RGRFAKAADP *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10023601m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294564.10.0zinc finger protein CONSTANS-LIKE 13 isoform X1
SwissprotO822560.0COL13_ARATH; Zinc finger protein CONSTANS-LIKE 13
TrEMBLR0FWW40.0R0FWW4_9BRAS; Uncharacterized protein
STRINGXP_006294564.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81482736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]