PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10023580m

Common Name

CARUB_v10023580mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Dof

Protein Properties

Length: 337aa MW: 36224.9 Da PI: 9.9344

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10023580m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.2	8.4e-39	94	152	4	62
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 lkcprCds+ntkfCy+nny+l+qPr+fCkaCrryWt+GGalrnvPvGgg+r+nkk + Carubv10023580m 94 GVLKCPRCDSANTKFCYFNNYNLTQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKGK 152 5789***************************************************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-36	77	147	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.3E-32	95	150	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.683	96	150	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	98	134	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MVFSTVSSFL DPPINWPQSS TNSNNHPHHL QLQESGSLVS AHHQVLSHHF PQNPNPNHHH 60 VDTTAAAATI DPGSLNGQAA ERARLAKNHQ PPEGVLKCPR CDSANTKFCY FNNYNLTQPR 120 HFCKACRRYW TRGGALRNVP VGGGCRRNKK GKSVSSKSSS SSSQNKPSTS MVNATSPTTT 180 SNVHLQPNSQ FPFLPTLQNL THLGGIGLNL APMNGNTSSS SFLNDLGFYH GGNTSGPVMS 240 NNNNNENNNI MTSLGTANNN FALFDRTMGL FNFPNESNMG LSSSGATRAS QTAPVKMEDI 300 SRSVSGLTSQ GNQSNQYWTG TGLPGSSSSN HHQHLM*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00281	DAP	Transfer from AT2G28810	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10023580m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT032877	0.0	BT032877.1 Arabidopsis thaliana unknown protein (At2g28810) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006294546.1	0.0	dof zinc finger protein DOF2.2 isoform X1
Swissprot	Q9ZV33	0.0	DOF22_ARATH; Dof zinc finger protein DOF2.2
TrEMBL	R0HD44	0.0	R0HD44_9BRAS; Uncharacterized protein
STRING	XP_006294546.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5336	17	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28810.1	1e-158	Dof family protein

Link Out ? help Back to Top
Phytozome	Carubv10023580m
Entrez Gene	17889416

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]