PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10023561m | ||||||||
Common Name | CARUB_v10023561mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | WRKY | ||||||||
Protein Properties | Length: 344aa MW: 37746.1 Da PI: 10.2958 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.9 | 1.3e-30 | 262 | 319 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +d +++++tYegeH+h+ Carubv10023561m 262 DEYSWRKYGQKPIKGSPHPRGYYKCSSFrGCPARKHVERALDDSTMLIVTYEGEHRHN 319 9************************9877****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 9.6E-18 | 209 | 258 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 1.1E-32 | 248 | 320 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.631 | 255 | 321 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.92E-26 | 258 | 320 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-36 | 260 | 320 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.9E-26 | 262 | 318 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
LFFSHSSKYR KLHISSDLLL IMTVDIMRIP KMEDQTAIQE AASQGLQSME HLIRILSNPP 60 QERSNVDCSE ITDFTVSKFK KVISLLNRTG HARFRRGPVH SPPPPPPPPP APVPVPVQIS 120 APVSFVQSNQ QSVTLDFTRP SSFGAKTKSC SEVVEFAKES FSVSSNNSSF MSSAITGDGS 180 VSKGSSIFLA PANPLPSSAK PPLSGLPYRK RCFEHDHSEN FSGKISGSGN GKCHCKKSRK 240 NRMKRTVRVP AISAKIADIP PDEYSWRKYG QKPIKGSPHP RGYYKCSSFR GCPARKHVER 300 ALDDSTMLIV TYEGEHRHNQ SAMQENMMMA TTPSVSGLVF GSV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-21 | 248 | 319 | 2 | 72 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00278 | DAP | Transfer from AT2G24570 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10023561m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF425836 | 0.0 | AF425836.1 Arabidopsis thaliana WRKY transcription factor 17 (WRKY17) mRNA, complete cds. | |||
GenBank | AK227604 | 0.0 | AK227604.1 Arabidopsis thaliana mRNA for WRKY transcription factor 17, complete cds, clone: RAFL14-20-C13. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006293496.2 | 0.0 | probable WRKY transcription factor 17 | ||||
Swissprot | Q9SJA8 | 0.0 | WRK17_ARATH; Probable WRKY transcription factor 17 | ||||
TrEMBL | R0HAG8 | 0.0 | R0HAG8_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_006293496.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2508 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24570.1 | 1e-178 | WRKY DNA-binding protein 17 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10023561m |
Entrez Gene | 17889298 |
Publications ? help Back to Top | |||
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