PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10023502m
Common NameCARUB_v10023502mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family TCP
Protein Properties Length: 361aa    MW: 40170.9 Da    PI: 7.1217
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10023502mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP92.31e-2826107170
              TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssa 70 
                      a+g+kdrhsk+ T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai++l                  +    
  Carubv10023502m  26 ATGRKDRHSKVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKTAIDKLEIAettttttrqepvntkP---G 107
                      589*********************************************************997774454444433332210...1 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.9E-3227114IPR005333Transcription factor, TCP
PROSITE profilePS5136932.2972987IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MGLKGYSVGE GGGEIVEVQG GHIIRATGRK DRHSKVFTSK GPRDRRVRLS AHTAIQFYDV  60
QDRLGYDRPS KAVDWLIKKA KTAIDKLEIA ETTTTTTRQE PVNTKPGSPN LVFQRDNNDQ  120
TQFVSANLDS EDAMKTFFPA TTTTSGGGGG TNMNFQNYPH HDDDNIVSRT TTTTPQNLSQ  180
DLGLSLHPFQ GNNNAVVVPE TNSFTTTHFD TFGRISGWNH HDLTMTSSSS SEQHEEERSN  240
GGFMVNHHHH HQHQPSMMTL LNSQQQQVFL GGQQQQQQQR GTLQSSLFPH SFRSWDHQTT  300
SDQHHHHHQN QASPVMFASQ FGSHGMMMMQ GLSFPNTTRL LHGEEATQPN SSSPPQNSHL  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-223487154Putative transcription factor PCF6
5zkt_B5e-223487154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10023502m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0053110.0AC005311.3 Arabidopsis thaliana chromosome 2 clone T16B12 map m283, complete sequence.
GenBankAY0599450.0AY059945.1 Arabidopsis thaliana Unknown protein (At2g31070; T16B12.12) mRNA, complete cds.
GenBankBT0011940.0BT001194.1 Arabidopsis thaliana Unknown protein (At2g31070) mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006293485.10.0transcription factor TCP10
SwissprotO822771e-178TCP10_ARATH; Transcription factor TCP10
TrEMBLR0HQX60.0R0HQX6_9BRAS; Uncharacterized protein
STRINGXP_006293485.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141581924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31070.11e-147TCP domain protein 10
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  2. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]