PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10023459m

Common Name

CARUB_v10023459mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Dof

Protein Properties

Length: 373aa MW: 40728.9 Da PI: 8.9232

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10023459m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.4	1.6e-38	78	136	4	62
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg++rknk+s+ Carubv10023459m 78 EKLNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKNKRST 136 7899****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-25	75	127	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.5E-33	79	134	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.901	80	134	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	82	118	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009409	Biological Process	response to cold
GO:0009416	Biological Process	response to light stimulus
GO:0009845	Biological Process	seed germination
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MDATKWTQGF QEMMNVKPME QIMIPNSSTH QSNTTSNARP NTILSSNGVS AAGAPVSGVS 60 NNNNNTAVVA ERKARPLEKL NCPRCNSTNT KFCYYNNYSL TQPRYFCKGC RRYWTEGGSL 120 RNVPVGGSSR KNKRSTSSSS SNILQTMPSS LGLTTTLPDL NPPILFSNQI PNKSKGSSQD 180 LNLLSFPVMQ DHHHHVHMSQ FLQMPKMEGN GNITHQQPSS SSSLYGSSSS PVSALELLRT 240 GVNVSSRSGI NSFMPPGPMM DSNTVLYTSS GFPTMVDYKP SNLSFSTDHQ GLGHNSNNNN 300 RSEAHNDHHQ EGRVLFPFGD QMKELSSSIT QEVDHDDNQQ QKSHGNHNNN NPSPTNGYWS 360 GMFSTTGGGS SW*

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MDATKWTQGF QEMMNVKPME QIMIPNSSTH QSNTTSNARP NTILSSNGVS AAGAPVSGVS  60
NNNNNTAVVA ERKARPLEKL NCPRCNSTNT KFCYYNNYSL TQPRYFCKGC RRYWTEGGSL  120
RNVPVGGSSR KNKRSTSSSS SNILQTMPSS LGLTTTLPDL NPPILFSNQI PNKSKGSSQD  180
LNLLSFPVMQ DHHHHVHMSQ FLQMPKMEGN GNITHQQPSS SSSLYGSSSS PVSALELLRT  240
GVNVSSRSGI NSFMPPGPMM DSNTVLYTSS GFPTMVDYKP SNLSFSTDHQ GLGHNSNNNN  300
RSEAHNDHHQ EGRVLFPFGD QMKELSSSIT QEVDHDDNQQ QKSHGNHNNN NPSPTNGYWS  360
GMFSTTGGGS SW*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the activation of a component that would trigger germination as a consequence of red light perception.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00319	DAP	Transfer from AT2G46590	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10023459m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352859	0.0	AK352859.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-N20.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006294447.1	0.0	dof zinc finger protein DOF2.5 isoform X1
Swissprot	Q9ZPY0	0.0	DOF25_ARATH; Dof zinc finger protein DOF2.5
TrEMBL	R0HPY2	0.0	R0HPY2_9BRAS; Uncharacterized protein
STRING	XP_006294447.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2528	26	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46590.2	0.0	Dof family protein

Link Out ? help Back to Top
Phytozome	Carubv10023459m
Entrez Gene	17888873

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]