PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10023420m
Common NameCARUB_v10023420mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 383aa    MW: 41915.4 Da    PI: 7.4761
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10023420mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00064202224123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C+ C+++Fs+   L  H  +H
  Carubv10023420m 202 YECKTCNRTFSSFQALGGHRASH 224
                      99**********99999998887 PP
2zf-C2H212.80.00035280302123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg  F++   L  H+r+H
  Carubv10023420m 280 HECSICGSEFTSGQALGGHMRRH 302
                      78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.5E-12201226IPR007087Zinc finger, C2H2
SuperFamilySSF576671.29E-8201224No hitNo description
PROSITE profilePS5015710.99202229IPR007087Zinc finger, C2H2
SMARTSM003550.063202224IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280204224IPR007087Zinc finger, C2H2
SuperFamilySSF576671.29E-8275302No hitNo description
PfamPF139122.2E-11279303IPR007087Zinc finger, C2H2
SMARTSM003550.019280302IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.743280302IPR007087Zinc finger, C2H2
PROSITE patternPS000280282302IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MVMEFGRENA EVSGNGPTIV FFTASLLSSS HLFSLVSSLH IIKTPKVSFF SLYFRVFLNL  60
VCFLIGFLIF LNCSFFFFLL LYLDMMMGQD EVGSDQTQII KGKRTKRQRS SSTFVVTAAT  120
TTTTVTSTSS SVGGSGGRAV SDEYNSAVSS PVSTDCTQEE EDMAICLIML ARGTVLPSPD  180
LKNSRKPHQK ISSDQNSSFY VYECKTCNRT FSSFQALGGH RASHKKPRTS TSTDEKTRSP  240
LMQPKSSLSE EGQNSLFKVS GSALPSQASN IIINKANKVH ECSICGSEFT SGQALGGHMR  300
RHRTAVTAAS PVAATTTVEV ISRNSSEEEE ENIEINLSRS MEQQRKYLPL DLNLPAPEDD  360
LRESKFQGIV FSATPALIDC HY*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10023420m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023639937.10.0zinc finger protein ZAT5
SwissprotQ681X41e-172ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLR0FX680.0R0FX68_9BRAS; Uncharacterized protein
STRINGXP_006294403.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58622748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-144C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]