PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10023414m | ||||||||
Common Name | CARUB_v10023414mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB | ||||||||
Protein Properties | Length: 386aa MW: 42801.2 Da PI: 7.2101 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.2 | 1.4e-16 | 54 | 99 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++e d l ++v++ G+++W++I+r ++ gR++k+c++rw + Carubv10023414m 54 KGPWSPEQDAALTRLVTKCGPRNWTLISRGIP-GRSGKSCRLRWCNQ 99 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 48.7 | 1.7e-15 | 106 | 149 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++++ eEd + a++ +G++ W+ Ia+ ++ gRt++ +k++w++ Carubv10023414m 106 KKPFSDEEDHMIMSAHAVHGNK-WAVIAKLLP-GRTDNAIKNHWNS 149 689*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.444 | 49 | 104 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.36E-30 | 51 | 147 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-13 | 53 | 102 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.0E-15 | 54 | 99 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-23 | 55 | 107 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.12E-12 | 56 | 98 | No hit | No description |
SMART | SM00717 | 2.3E-13 | 105 | 153 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.009 | 105 | 155 | IPR017930 | Myb domain |
Pfam | PF00249 | 4.2E-14 | 106 | 149 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.37E-9 | 108 | 151 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-23 | 108 | 154 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MNAAISHPPE LMPSLNLSTG CDGSEDAINA AVEEELAELA KGDSSSGGGR SKVKGPWSPE 60 QDAALTRLVT KCGPRNWTLI SRGIPGRSGK SCRLRWCNQL DPCLKKKPFS DEEDHMIMSA 120 HAVHGNKWAV IAKLLPGRTD NAIKNHWNSS LRRKPADVWK DHQGIPSTEI YQVHPSKVRK 180 ISNETSPREH LPREEVNSFM APVVNDDQMA NEPNEPLLEQ KSKPDVYRPV ARMGAFSVCK 240 QGYMNHHMAP CEGPLVHASR PGSLAGKFLQ SLCYEPIVPS KCGRGCCNHS DNKTLCNSVL 300 GPEFVDYEEH SSAELDQELI SISTDLNNIA WIRTGSDNKY FKEAEQSLKA DDQYHHREYA 360 HPKFTGMVNN SVSSQMLRQD LRALN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-37 | 53 | 154 | 3 | 104 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for male gametophyte (pollen) development. {ECO:0000269|PubMed:22101548}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10023414m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: May be the target of the microRNA (miRNA) MIR393a. {ECO:0000269|PubMed:15258262}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006294397.1 | 0.0 | transcription factor MYB25 | ||||
Swissprot | O04192 | 0.0 | MYB25_ARATH; Transcription factor MYB25 | ||||
TrEMBL | R0HPT0 | 0.0 | R0HPT0_9BRAS; Uncharacterized protein | ||||
STRING | XP_006294397.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5638 | 27 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G39880.1 | 1e-172 | myb domain protein 25 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10023414m |
Entrez Gene | 17889485 |
Publications ? help Back to Top | |||
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