PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Carubv10023302m | ||||||||
Common Name | CARUB_v10023302mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 416aa MW: 46679.4 Da PI: 6.9089 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.7 | 9.8e-32 | 86 | 139 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH +F++ave+LGG+++AtPk +l+lm+vkgL+++hvkSHLQ+YR+ Carubv10023302m 86 PRLRWTPELHICFLQAVERLGGPDRATPKLVLQLMNVKGLSIAHVKSHLQMYRS 139 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.117 | 82 | 142 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-30 | 82 | 140 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.02E-16 | 83 | 141 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.9E-24 | 86 | 141 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.3E-9 | 87 | 138 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 416 aa Download sequence Send to blast |
MRSSSKSSEN SKTCLSNNFK ATTNIEEDKE EEEDEEGEED EEERSGDQSP SSNSYVEESG 60 SHQHHHHDQI KKNGGSVRPY NRSKTPRLRW TPELHICFLQ AVERLGGPDR ATPKLVLQLM 120 NVKGLSIAHV KSHLQMYRSK KTDDPNQGDQ GFSFEHGAGY TYNLSQLPML QSFDQRPSSS 180 LGYGGGSWTD HRRQIYRSPW RGLTARDNTR TRQTLFSARP GERVHHGVSN SILDDKNKTI 240 SFRINSHEAA HENNGVAEVV PRIHRSILEG MKTFNKSWGQ SLSSNLNPSI ATRPQDHIAT 300 TLNSYQWENS RVAEGSENVL KRKRLLLSDD CNKSDQDLDL SLSLKVPRTH DNLGECLLED 360 EEKENGDQQD SLQGLSLSLS SSGISKLGPT IRKEDRTDHK KGKITVLASP LDLTL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 3e-17 | 87 | 141 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-17 | 87 | 141 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-17 | 87 | 141 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-17 | 87 | 141 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00301 | DAP | Transfer from AT2G40260 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Carubv10023302m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC254595 | 0.0 | AC254595.1 Capsella rubella clone CAP16-M18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006294294.1 | 0.0 | putative two-component response regulator-like APRR6 | ||||
TrEMBL | R0FW67 | 0.0 | R0FW67_9BRAS; Uncharacterized protein | ||||
STRING | XP_006294294.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9359 | 21 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G40260.1 | 0.0 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Carubv10023302m |
Entrez Gene | 17888272 |