PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10023302m
Common NameCARUB_v10023302mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family G2-like
Protein Properties Length: 416aa    MW: 46679.4 Da    PI: 6.9089
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10023302mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.79.8e-3286139255
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      prlrWtpeLH +F++ave+LGG+++AtPk +l+lm+vkgL+++hvkSHLQ+YR+
  Carubv10023302m  86 PRLRWTPELHICFLQAVERLGGPDRATPKLVLQLMNVKGLSIAHVKSHLQMYRS 139
                      8****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.11782142IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-3082140IPR009057Homeodomain-like
SuperFamilySSF466895.02E-1683141IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-2486141IPR006447Myb domain, plants
PfamPF002492.3E-987138IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MRSSSKSSEN SKTCLSNNFK ATTNIEEDKE EEEDEEGEED EEERSGDQSP SSNSYVEESG  60
SHQHHHHDQI KKNGGSVRPY NRSKTPRLRW TPELHICFLQ AVERLGGPDR ATPKLVLQLM  120
NVKGLSIAHV KSHLQMYRSK KTDDPNQGDQ GFSFEHGAGY TYNLSQLPML QSFDQRPSSS  180
LGYGGGSWTD HRRQIYRSPW RGLTARDNTR TRQTLFSARP GERVHHGVSN SILDDKNKTI  240
SFRINSHEAA HENNGVAEVV PRIHRSILEG MKTFNKSWGQ SLSSNLNPSI ATRPQDHIAT  300
TLNSYQWENS RVAEGSENVL KRKRLLLSDD CNKSDQDLDL SLSLKVPRTH DNLGECLLED  360
EEKENGDQQD SLQGLSLSLS SSGISKLGPT IRKEDRTDHK KGKITVLASP LDLTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-1787141357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-1787141357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-1787141357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-1787141357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00301DAPTransfer from AT2G40260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10023302m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545950.0AC254595.1 Capsella rubella clone CAP16-M18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294294.10.0putative two-component response regulator-like APRR6
TrEMBLR0FW670.0R0FW67_9BRAS; Uncharacterized protein
STRINGXP_006294294.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93592136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.10.0G2-like family protein