PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10023260m
Common NameCARUB_v10023260mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 431aa    MW: 48450 Da    PI: 4.9304
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10023260mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.11e-10219261754
                      HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        Er RR ++N+++e L+ l+P++      K + a+iL+  ++YI++L
  Carubv10023260m 219 TTERERRCHLNERYEALKLLIPNP-----SKGDRASILQDGIDYINEL 261
                      67*********************9.....79**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.16E-11210266No hitNo description
SuperFamilySSF474597.85E-14211280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-11211270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.138212261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-9218267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-8219261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
KMYEESSCFD PIPTVEAIMD NDGGFCAAET TFPVSHQFQP PLGSTTNSFN DDLKLPTMEE  60
FSVFPSVISL PNSETQNQSN NHLINQMIQD SNWGVSADNS GFFMNTCDPN TTSTPIPDLL  120
SLLHLPRSSF SLPSSNLSDI MAGSCFTYDP LFHLNLPPQP PLIPANDYSG FLLGIDNNAT  180
SQRDDSNVGN EINIDSGIIE FSKEIRRKGR GKRKNRPFTT ERERRCHLNE RYEALKLLIP  240
NPSKGDRASI LQDGIDYINE LRRRVSELKY LVERKRCGGR QQNNEVDNNN NNNNLDGHIN  300
EDDVDDDENM NKKPESDVTD QCSSNNSLRC SWLQRKSKAS EVDVRIVDDE VTIKVVQKKK  360
INCLLLVSKV LDHLQLDLHH VAGGQIGEHY SFLFNTKIYE GSTIYASAIA NRVIEVVDKH  420
YMASLPINNY *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10023260m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5198090.0AJ519809.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor.
GenBankAK1184410.0AK118441.1 Arabidopsis thaliana At2g31210 mRNA for putative bHLH transcription factor (bHLH091), complete cds, clone: RAFL19-68-P06.
GenBankBT0096750.0BT009675.1 Arabidopsis thaliana At2g31210 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294262.20.0transcription factor bHLH91
SwissprotQ8GX460.0BH091_ARATH; Transcription factor bHLH91
TrEMBLR0HPE80.0R0HPE8_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006294262.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]