PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10023219m
Common NameCARUB_v10023134mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 446aa    MW: 47354.5 Da    PI: 8.7553
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10023219mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.66.7e-115074327
                     S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                      + C +++rtG C yG+rC+++H++
  Carubv10023219m 50 APDCAYYMRTGVCGYGNRCRYNHPR 74
                     589********************96 PP
2zf-CCCH40.54.4e-1395119327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C+f+++tGtCk+G++CkF+H++
  Carubv10023219m  95 EPPCQFYLKTGTCKFGASCKFHHPK 119
                      79*********************96 PP
3zf-CCCH37.93e-12266292127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C+++++tG Ck+G +CkF+H++
  Carubv10023219m 266 PGEPECQYYLKTGDCKFGTSCKFHHPR 292
                      5799*********************96 PP
4zf-CCCH32.51.5e-10313338227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      +  +C f+ ++G+Ck+G++CkF H++
  Carubv10023219m 313 GVQRCTFYVQNGFCKFGSTCKFDHPM 338
                      6779********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.8824775IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-54774IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-85074IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-65276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-55374IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-792119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.90192120IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-1095119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-695120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-597118IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5265292IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.356265293IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-9267292IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6270294IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-5271293IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5311338IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23311339IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6313342IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-8313338IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-5317338IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MDLYARNPPI NGSQSALAPD WIPADADTGL EESMWRLGLG SETYPERPGA PDCAYYMRTG  60
VCGYGNRCRY NHPRDRASVE ATVRATGQYP ERIGEPPCQF YLKTGTCKFG ASCKFHHPKN  120
AGGSMSHVPL NIYGYPVREP AGTTVPPPPA SAPQFYPSVQ SLMPDQYGGP SSSLRVARTL  180
LPGSYMQGAY GPMLLTPGVV PIPGWSPYSA PVSPALSPGA QHAVGATSLY GVTQLSSTTP  240
SLPGVYPSLS SPTGVIQKEQ AFPERPGEPE CQYYLKTGDC KFGTSCKFHH PRDRVPPRAN  300
CILSPIGLPL RPGVQRCTFY VQNGFCKFGS TCKFDHPMGN IRYNPSASSL ADAPVAPYPV  360
SSLLGGGLAA APSSSSTELI TGGAKDPYLT GLPSSRSTSS ISAGLIFSQS GGSIPFSELQ  420
LSSQTSLPLT GSRITRQGRE IRRSF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10023219m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0303910.0BT030391.1 Arabidopsis thaliana At2g47850 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294140.10.0zinc finger CCCH domain-containing protein 32 isoform X2
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLR0HSN80.0R0HSN8_9BRAS; Uncharacterized protein
STRINGXP_006294141.10.0(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.20.0C3H family protein