PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10022974m
Common NameCARUB_v10022974mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 532aa    MW: 60281 Da    PI: 9.2772
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10022974mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.43.1e-1423991296
                     HTT-EE--HHH.HTT..---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3 12 ksgrlvlpkkfaeeh..ggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                     + + l +p  f+ +h  g++ e+++t  l++  +   +W+vk+  ++++    l+ GW +Fv a++L++gD+vvF+++g    elv++v
  Carubv10022974m 23 S-NHLDIPVAFFLKHlvGSN-EGKTTAELRSDASekITWKVKI--DGRR----LSHGWDGFVIAHDLRVGDIVVFRHEG----ELVFHV 99
                     3.4488**********7555.5667888888554338899999..8888....99*********************765....444444 PP
2B357.62.2e-18140232397
                      EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                        ++++++l+++ ++lpk fa+++g+   ++ +++l +e+g+sW++ l++  + s r+ +++GW++F+ ang k gD + Fkl++ +e+++v+k
  Carubv10022974m 140 VLTVTASNLRRDTVYLPKGFARSNGLM--NKYQIVLINEKGESWTIDLRHeLNPSVRFNMRRGWRSFCVANGKKPGDLIAFKLVQ-NEETPVLK 230
                      5567999*****************877..4568***************997666777**************************99.55558888 PP

                      EE CS
               B3  96 vf 97 
                      +f
  Carubv10022974m 231 LF 232
                      76 PP
3B364.91.2e-20267355596
                      -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                       ++ ++l+++r++lpk+f+e++g+ k  ++++ l++e+g+sW++ ++++ +sgr++  +GWk+F+ ang k gD+++Fkl+++ ++ +v+++
  Carubv10022974m 267 RVTTSNLSRDRMYLPKTFIESNGLLK--KFQMLLMNEEGESWKIDVKHEAYSGRFLTIRGWKSFCLANGKKPGDSFTFKLVEN-DEVPVLRL 355
                      56889999**************9995..568************************999*********************9985.44466655 PP
4B346.37.6e-154485301499
                      T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      + l lp +f++++g++k++  ++t+ d+ g +W+  l ++k+sg++ l++G k+F++ ng+k ++++v++l++ +++ + +k+++k
  Carubv10022974m 448 SKLNLPLEFMKAIGINKAG--KITMVDRYGGRWSTPLLMDKRSGTMSLGRGSKGFCEINGVKMNESFVLELIW-EDTVPILKFCSK 530
                      5689************888..7***************************************************.777799999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-188107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.44E-189111IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.91211105IPR003340B3 DNA binding domain
CDDcd100175.56E-1412100No hitNo description
SMARTSM010194.1E-2114105IPR003340B3 DNA binding domain
PfamPF023621.4E-92398IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.1E-19136230IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-19138233IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.1E-28138235IPR003340B3 DNA binding domain
CDDcd100172.44E-16138233No hitNo description
PROSITE profilePS5086315.129138235IPR003340B3 DNA binding domain
PfamPF023621.2E-16139232IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-20257354IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-21258354IPR015300DNA-binding pseudobarrel domain
CDDcd100171.19E-18263357No hitNo description
PROSITE profilePS5086314.438263359IPR003340B3 DNA binding domain
SMARTSM010193.2E-29264359IPR003340B3 DNA binding domain
PfamPF023626.0E-19267356IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-14432530IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.446435530IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-15435530IPR015300DNA-binding pseudobarrel domain
SMARTSM010199.9E-19439531IPR003340B3 DNA binding domain
CDDcd100171.36E-10448529No hitNo description
PfamPF023626.1E-13448530IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MVNQPLYSPI NPHFFQPLLP GYSNHLDIPV AFFLKHLVGS NEGKTTAELR SDASEKITWK  60
VKIDGRRLSH GWDGFVIAHD LRVGDIVVFR HEGELVFHVS ALGPSCCQIQ YTEDKREKKQ  120
SLKREAADSE PDHSLDSCFV LTVTASNLRR DTVYLPKGFA RSNGLMNKYQ IVLINEKGES  180
WTIDLRHELN PSVRFNMRRG WRSFCVANGK KPGDLIAFKL VQNEETPVLK LFPMDSEVPE  240
ILENLPRKRS GRSEVDDSPD CSSFVARVTT SNLSRDRMYL PKTFIESNGL LKKFQMLLMN  300
EEGESWKIDV KHEAYSGRFL TIRGWKSFCL ANGKKPGDSF TFKLVENDEV PVLRLFPFNS  360
EDSHKVEPSN DTRQGKCLKA TKKEFLGVEA TEKEFLGVEV RRNDSTARVE EPTNDDRRKA  420
IKQEYVSTKG NSSRSQNRLV TLTLTPASKL NLPLEFMKAI GINKAGKITM VDRYGGRWST  480
PLLMDKRSGT MSLGRGSKGF CEINGVKMNE SFVLELIWED TVPILKFCSK V*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10022974m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006293983.10.0B3 domain-containing protein REM10
SwissprotP0DH850.0REM10_ARATH; B3 domain-containing protein REM10
TrEMBLR0FW980.0R0FW98_9BRAS; Uncharacterized protein
STRINGXP_006293983.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144901522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]