PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10022918m
Common NameCARUB_v10022918mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 563aa    MW: 64216 Da    PI: 7.8421
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10022918mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.86.8e-1224110196
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                      ffk l     + s+ l++p  f+ ++  g   e++ t  l++  s   W+vk+  ++++    +t+GW+eF+ a++L+ gD+ +F+ +  +   
  Carubv10022918m  24 FFKPL--LPGFHSH-LTIPVAFFLKYieG-RDEQKSTAELTSdVSKIIWNVKI--DGQR----FTDGWEEFAIAHDLRIGDIAIFRQE--RHLA 105
                      66666..5667777.************64.44555577777759999******..8888....9**********************43..3444 PP

                      .EEEE CS
               B3  92 lvvkv 96 
                      ++v++
  Carubv10022918m 106 FHVTL 110
                      46655 PP
2B3727.4e-23152238490
                      E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      + + +++ + ++l +p++f+++++ + ++s +++l++e+gr+W++kl  +   g +++++GW+ F++angLk+gD+++Fkl++r ++
  Carubv10022918m 152 AKVAPSSIRYDLLLFPRPFVKANSRVINGSGEIVLMNEKGRTWTFKLHKKPACGNVYIRGGWRVFCDANGLKDGDTFTFKLIQRGGT 238
                      45678899999************88888999****************88888889***************************97444 PP
3B364.41.8e-20299386495
                      E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      + +++++l+ + ++lpk f++e+g++ +++ +++l +e+grsW++ l  r+ks+++ + +GW++F+ +ngL+++ +v+Fkl++ +e++l+++
  Carubv10022918m 299 ANISPSMLRYDTMYLPKWFMRENGIDGRCG-DMILLNEKGRSWTLDL--RRKSCGTAFLRGWRSFCLDNGLRAKMVVTFKLIK-KEGTLTLR 386
                      56789999***************9987776.****************..99999999999*********************98.66666665 PP
4B356.45.4e-18462559199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                      f++  +++++ + + +++p +f++++g++ke+  ++ l d++gr+W+ kl+    +s+r  l +GWk+F +ang+k+++++ ++l++++e+++v
  Carubv10022918m 462 FVTLSLRPYNISCSVMRFPIPFTRTNGINKET--KMALLDKQGRKWSTKLRSeGANSERLRLVGGWKGFLEANGVKANESIKLELIWEEETTCV 553
                      566677889999999************99655..8***************887889999*****************************999999 PP

                      EEEE-S CS
               B3  94 vkvfrk 99 
                      +k+++k
  Carubv10022918m 554 LKFRSK 559
                      999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.2521114IPR003340B3 DNA binding domain
SuperFamilySSF1019365.49E-1521121IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-1721127IPR015300DNA-binding pseudobarrel domain
CDDcd100174.52E-1122111No hitNo description
SMARTSM010196.7E-1824114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.9E-21143242IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-21147246IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.777149247IPR003340B3 DNA binding domain
CDDcd100177.86E-21149243No hitNo description
SMARTSM010191.5E-26150247IPR003340B3 DNA binding domain
PfamPF023624.1E-22151240IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-18289380IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-17294391IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.099296391IPR003340B3 DNA binding domain
CDDcd100179.88E-18296387No hitNo description
SMARTSM010192.8E-22297391IPR003340B3 DNA binding domain
PfamPF023624.6E-19298387IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-18454559IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.18E-17456558IPR015300DNA-binding pseudobarrel domain
CDDcd100174.42E-14461557No hitNo description
PROSITE profilePS5086313.662462559IPR003340B3 DNA binding domain
PfamPF023621.0E-17462559IPR003340B3 DNA binding domain
SMARTSM010195.9E-25462560IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
FPKNTDTFGD LELLKILGMA NKHFFKPLLP GFHSHLTIPV AFFLKYIEGR DEQKSTAELT  60
SDVSKIIWNV KIDGQRFTDG WEEFAIAHDL RIGDIAIFRQ ERHLAFHVTL LGPSSCELQY  120
GSCFDQESNL EEKKSPNKEA ETSSLDPSCF VAKVAPSSIR YDLLLFPRPF VKANSRVING  180
SGEIVLMNEK GRTWTFKLHK KPACGNVYIR GGWRVFCDAN GLKDGDTFTF KLIQRGGTRV  240
LRLVPKEPVE EEANDVSPST EPECHEDSNI GKIQKKMETE KNPRRETESS SLDTSCFVAN  300
ISPSMLRYDT MYLPKWFMRE NGIDGRCGDM ILLNEKGRSW TLDLRRKSCG TAFLRGWRSF  360
CLDNGLRAKM VVTFKLIKKE GTLTLRLTPN EAEEEEQEEE AKEEEEEEAK EEEEEEVKEV  420
ESLSTDHGSN KESSQNKKIS QESSKKRRLR WNSSSSPSKN RFVTLSLRPY NISCSVMRFP  480
IPFTRTNGIN KETKMALLDK QGRKWSTKLR SEGANSERLR LVGGWKGFLE ANGVKANESI  540
KLELIWEEET TCVLKFRSKV NL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10022918m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006293928.20.0putative B3 domain-containing protein REM15
SwissprotQ8GYM40.0REM14_ARATH; B3 domain-containing protein REM14
TrEMBLR0FW440.0R0FW44_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006293928.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.10.0B3 family protein