PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10022859m
Common NameCARUB_v10022672mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 598aa    MW: 67627.8 Da    PI: 8.0503
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10022859mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.59e-2287177598
                      -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                       + +  ++++rl+lp +f++e+g++k++  ++ l  ++g +W  +l  + ++gr++l++GWk+FvkangLk+g++v+++l + +++++v++++ 
  Carubv10022859m  87 RLAPVDGRHCRLRLPMQFTRENGINKPG--KIYLLGKDGSKWLANLLSESNRGRMTLGDGWKSFVKANGLKTGESVTLRLYW-EDTTPVLSLCP 177
                      55667889***************99776..8***************999999***************************999.88889999885 PP
2B370.32.5e-22250340498
                      E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                        +++d lk+grl++p +f++e++++k++  ++tl  ++g +W   l    k+gr+ l+kGWkeF+kangLk+ D+++F+l++ +++++ +k++
  Carubv10022859m 250 LKITPDCLKHGRLRIPLQFMTENSMNKPG--EITLLGKDGAKWLASLL-LEKRGRMSLGKGWKEFAKANGLKTDDSITFELIW-ENATPILKLL 339
                      56789******************999766..8***************5.66667889**************************.7888888887 PP

                      - CS
               B3  98 r 98 
                      r
  Carubv10022859m 340 R 340
                      6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0029003238IPR003006Immunoglobulin/major histocompatibility complex, conserved site
Gene3DG3DSA:2.40.330.103.4E-2277178IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-2282180IPR015300DNA-binding pseudobarrel domain
PfamPF023623.3E-2183177IPR003340B3 DNA binding domain
PROSITE profilePS5086314.80483179IPR003340B3 DNA binding domain
SMARTSM010193.6E-2983179IPR003340B3 DNA binding domain
CDDcd100172.36E-2093177No hitNo description
Gene3DG3DSA:2.40.330.104.2E-21240336IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.67E-22243338IPR015300DNA-binding pseudobarrel domain
CDDcd100174.07E-20246340No hitNo description
PROSITE profilePS5086315.368247342IPR003340B3 DNA binding domain
SMARTSM010193.9E-31247342IPR003340B3 DNA binding domain
PfamPF023625.3E-22249340IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MMFQVADHQD NNIEFQRNKK VKQNNHETES DYSCLVTHVT ASSQHTDALY LPQDLTSSNG  60
LTRKCSKSPR QIFSSYSSSE KQFVTFRLAP VDGRHCRLRL PMQFTRENGI NKPGKIYLLG  120
KDGSKWLANL LSESNRGRMT LGDGWKSFVK ANGLKTGESV TLRLYWEDTT PVLSLCPEVY  180
NTETRVGEEC LDASEKESFP IEPSSKVEII KDDINKDKNT KDESSSWERE NHHMRCMDST  240
SPSQNHILTL KITPDCLKHG RLRIPLQFMT ENSMNKPGEI TLLGKDGAKW LASLLLEKRG  300
RMSLGKGWKE FAKANGLKTD DSITFELIWE NATPILKLLR IESSYGRRES GFSKESLTME  360
PNRGNKTKKA DNNREESKMY PPRCRESTTT IQNQFMALTF TCNTISLGAH DPQTREAFIF  420
RHEGDNMLHI SDLGHSCFGI RDVTAPSSKN DHDRIGNISM KMHPHLSQEA GFSSYDGDDH  480
GNFEGPSKKV KKNNPETQED YSSDHSRFVT TSSLHANALS LAVKESLPIK PSNVRKISEY  540
DNNKDENSKE ENNIEVSSSC EREKNHLRCI ASISPSQNRY VTLTITPDSL RQGRLVS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10022859m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023639408.10.0B3 domain-containing protein REM-like 1 isoform X1
SwissprotQ8S8E80.0REML1_ARATH; B3 domain-containing protein REM-like 1
TrEMBLR0HRK50.0R0HRK5_9BRAS; Uncharacterized protein
STRINGXP_006293714.10.0(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24690.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]