PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10022816m
Common NameCARUB_v10022816mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GRAS
Protein Properties Length: 633aa    MW: 72806.4 Da    PI: 5.1818
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10022816mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3466.2e-1062536292373
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfs 94 
                      ++lL+ cA+a+s+gd++ a  lL ++++++sp gd+ qRla++f++AL+arl +s+  + ++  ++ ++ +++ s++l+a++++   sP++++ 
  Carubv10022816m 253 RTLLTLCAQAISTGDKTTALDLLMQIRQQSSPIGDAGQRLAHCFANALEARLEGSTGPMIQTYyNAITSLKETASDTLKAYRVYLSSSPFVTLM 346
                      6799**************************************************7666666654777888888********************* PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                      ++   ++Il+  + ++ +Hi+Df+i +G+QWp ++q ++ R++ p +lRiTg++ p+ g   +e++eetg+rLa+++++++vpfe+++++++++
  Carubv10022816m 347 YFFSFRMILDKSKDASVLHIVDFGILYGFQWPMFIQYISRRQDAPRKLRITGIELPQRGfrPTERIEETGRRLAEYCKRFNVPFEYKAIASQHW 440
                      *********************************************************99*****************************9999** PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                      e++++e+L+++p+E+laV   ++l++l de++s e+ +rd+vLkl+++++P+v++++  + + n++ F  rf ea+++ysalfd+++++lpr++
  Carubv10022816m 441 ETIRIEDLDIRPNEVLAVTAGVRLKNLQDETGSEENcPRDAVLKLIRNMNPNVFIHSIVNGSFNAPFFISRFKEAVYHYSALFDMFDSTLPRDN 534
                      ************************************99******************************************************** PP

             GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSa 372
                      eeri  Ere+ gre++nv+ace+a+r+er et+++W+ r  +aGF++ p++ ++++  +  l+k +  + + v+e+s++l++gWk+r+L++ S+
  Carubv10022816m 535 EERIRFEREFYGREAMNVIACEEADRVERPETYRQWQVRTVRAGFRQEPIRADMVELFRERLKKWGyHKDFVVDENSKWLLQGWKGRTLYASSC 628
                      *****************************************************************99999************************ PP

             GRAS 373 W 373
                      W
  Carubv10022816m 629 W 629
                      * PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.485226609IPR005202Transcription factor GRAS
PfamPF035142.1E-103253629IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    Send to blast
MDHNFSESLI GFDANPSYLS DPVEDQNTLL KYVSEILMEE SNGDYKQSMF YDSLALRKTE  60
EMFQQVIEED SQNQSFSADS IITTSCSCAG DASGSIVESV HSPDLLIGPA VDEIVVKSMF  120
SDADSALQFR KGVEEASKFL PNSDQWLINL ETDRPERRDF VKEGMGLDPL RVKRSHEREV  180
IDFEEVRNSK QFATNVEDEK ITEVFDKVLL LDSECDPPTL LDGTIQDIRS NKQEGKGKKE  240
KKKKKKSQVV DFRTLLTLCA QAISTGDKTT ALDLLMQIRQ QSSPIGDAGQ RLAHCFANAL  300
EARLEGSTGP MIQTYYNAIT SLKETASDTL KAYRVYLSSS PFVTLMYFFS FRMILDKSKD  360
ASVLHIVDFG ILYGFQWPMF IQYISRRQDA PRKLRITGIE LPQRGFRPTE RIEETGRRLA  420
EYCKRFNVPF EYKAIASQHW ETIRIEDLDI RPNEVLAVTA GVRLKNLQDE TGSEENCPRD  480
AVLKLIRNMN PNVFIHSIVN GSFNAPFFIS RFKEAVYHYS ALFDMFDSTL PRDNEERIRF  540
EREFYGREAM NVIACEEADR VERPETYRQW QVRTVRAGFR QEPIRADMVE LFRERLKKWG  600
YHKDFVVDEN SKWLLQGWKG RTLYASSCWV PV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-412526295374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237245KKEKKKKKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10022816m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006293832.10.0scarecrow-like protein 34 isoform X3
RefseqXP_006293833.10.0scarecrow-like protein 34 isoform X3
SwissprotP0C8840.0SCL34_ARATH; Scarecrow-like protein 34
TrEMBLR0FVU80.0R0FVU8_9BRAS; Uncharacterized protein
STRINGXP_006293832.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29065.10.0GRAS family protein