PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Carubv10022755m | ||||||||
Common Name | CARUB_v10022755mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 701aa MW: 77363.6 Da PI: 7.57 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.3 | 3.4e-24 | 115 | 216 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f k+lt+sd+++ g +++p+ +ae++ +++ + t++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF ++ Carubv10022755m 115 FAKTLTQSDANNGGGFSVPRYCAETIfprldytAEPPVQ--TVIAKDIHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLIAGDSIVFL--RS 204 89****************************987555555..8************************************************..45 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++ l+v+++r+ Carubv10022755m 205 ESGDLCVGIRRA 216 89999****997 PP | |||||||
2 | Auxin_resp | 114.6 | 8.9e-38 | 277 | 360 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a+ +a+ +++FevvY+Prast+eF+vk+++v++a++++++ GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+ Carubv10022755m 277 AVARAACGQAFEVVYYPRASTPEFCVKAADVRSAMRIRWCSGMRFKMAFETEDSSRISWfMGTVSAVQVADPIRWPNSPWRLLQ 360 56778899**************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.9E-37 | 108 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.88E-29 | 108 | 216 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.99E-21 | 114 | 215 | No hit | No description |
PROSITE profile | PS50863 | 13.155 | 115 | 217 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-21 | 115 | 217 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.7E-22 | 115 | 216 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.7E-32 | 278 | 360 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 19.344 | 587 | 675 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0009743 | Biological Process | response to carbohydrate | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0031540 | Biological Process | regulation of anthocyanin biosynthetic process | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048441 | Biological Process | petal development | ||||
GO:0048442 | Biological Process | sepal development | ||||
GO:0048589 | Biological Process | developmental growth | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 701 aa Download sequence Send to blast |
MEQEKSLDPQ LWHACAGSMV QIPSVNSTVF YFAQGHTEHA HAPPDFHAPR VPPLILCRVV 60 SVKFLADAET DEVFSKITLL PLPGNDLDLD NDAVLGLTPP PSDVNVNGNE KPASFAKTLT 120 QSDANNGGGF SVPRYCAETI FPRLDYTAEP PVQTVIAKDI HGETWKFRHI YRGTPRRHLL 180 TTGWSTFVNQ KKLIAGDSIV FLRSESGDLC VGIRRAKRGG LGSNGLASDN NPYPGFSGFL 240 RDDETTTTTT SKLMMMKRNE GNTAAAGRVR VEAVAEAVAR AACGQAFEVV YYPRASTPEF 300 CVKAADVRSA MRIRWCSGMR FKMAFETEDS SRISWFMGTV SAVQVADPIR WPNSPWRLLQ 360 VAWDEPDLLQ NVKRVSPWLV ELVSNMPAIH LSPFSPRKKI RMPQPFEFPF DGTKFPIFSP 420 GFASNGAGES VCYLSNDNNN APAGIQGARQ AQAQQLFGSP SPSLLSDLNL SSYSGNNKLQ 480 SPAMFLSGFN PRHHYDSIVS RQGRDMENGN NISCSLTMGN PGMVQDKKKS GGSVKTHQFL 540 LFGQPILTEQ QVMNRKRSLE EEAEAREEKG SAARGLTWNY GFQGLETGHC KVFMESEDVG 600 RTLDLSVIGS YQELYRKLAE MFHIEERLDL LTHVVYQDAN NVTKRIGDEP FSDFMRATKR 660 LTIKMDIGGD SVRKTWITGI RNGENGIDAS AKTGPLSIFA * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 4e-80 | 7 | 381 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Carubv10022755m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF325073 | 0.0 | AF325073.1 Arabidopsis thaliana unknown protein (At2g28350) mRNA, complete cds. | |||
GenBank | AF336919 | 0.0 | AF336919.1 Arabidopsis thaliana clone C00034 (b) auxin response factor 10 (At2g28350) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006293778.1 | 0.0 | auxin response factor 10 | ||||
Swissprot | Q9SKN5 | 0.0 | ARFJ_ARATH; Auxin response factor 10 | ||||
TrEMBL | R0FVP9 | 0.0 | R0FVP9_9BRAS; Auxin response factor | ||||
STRING | XP_006293778.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM580 | 27 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G28350.1 | 0.0 | auxin response factor 10 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Carubv10022755m |
Entrez Gene | 17889789 |