PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10022677m
Common NameCARUB_v10022677mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HD-ZIP
Protein Properties Length: 778aa    MW: 85237.5 Da    PI: 6.4712
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10022677mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.95.6e-2194149156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++ +++t++q++eLe++F+++++p++++r +L+++l+L+ rqVk+WFqNrR+++k
  Carubv10022677m  94 KKRYHRHTPQQIQELESVFKECPHPDEKQRLDLSRRLNLDSRQVKFWFQNRRTQMK 149
                      688999***********************************************999 PP
2START1816.6e-572985251206
                      HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
            START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                      ela++a++elvk+a+ +ep+W  ss    e++n++e+ ++f++  +     + +ea++++gvv+ ++  lve+l+d+  +W e+++    + +t
  Carubv10022677m 298 ELALTAMDELVKMAQTSEPLWIPSSkgkgEMLNREEYEKNFTPCLGpkpdgFVSEASKEVGVVIINSLALVETLMDSE-RWAEMFPcmiaRNST 390
                      5899*********************9***************88666999999**************************.*************** PP

                      EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEE CS
            START  82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvt 165
                       e issg      gal+lm+ae q+lsplvp R ++f+R+++q+ +g+w++vdvSvd  +++      + +  +++lpSg+l+++++ng+skvt
  Carubv10022677m 391 SEIISSGmggtrnGALHLMQAEIQLLSPLVPvRQVTFLRFCKQHAEGVWAVVDVSVDRISDRGGsasAHTSLSCRRLPSGCLVQDMPNGYSKVT 484
                      *********************************************************988887666888899********************** PP

                      EEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 166 wvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      w++h+++++  +h+l+r+lv+sgla+g k+w + lqrqce+
  Carubv10022677m 485 WIDHTEYDDTRIHNLYRPLVSSGLAFGSKRWISVLQRQCES 525
                      ***************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.41E-2178151IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-2182151IPR009057Homeodomain-like
PROSITE profilePS5007117.63791151IPR001356Homeobox domain
SMARTSM003893.2E-1992155IPR001356Homeobox domain
PfamPF000461.3E-1894149IPR001356Homeobox domain
CDDcd000868.83E-1994151No hitNo description
PROSITE patternPS000270126149IPR017970Homeobox, conserved site
PROSITE profilePS5084842.025289528IPR002913START domain
SuperFamilySSF559614.26E-29292525No hitNo description
CDDcd088751.11E-114293524No hitNo description
PfamPF018524.7E-49298525IPR002913START domain
SMARTSM002341.6E-45298525IPR002913START domain
SuperFamilySSF559613.85E-20553769No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 778 aa     Download sequence    Send to blast
MNFSGFLHHD DDSSSGGGNH FSSAAMSGGL VKSIFSSPRL SLGLQTNGEA TRTGESFEVS  60
VSRRSPESRS GSDNADALSG DDDLDASDRP LKKKKRYHRH TPQQIQELES VFKECPHPDE  120
KQRLDLSRRL NLDSRQVKFW FQNRRTQMKT QIERHENSLL RQENDKLRAE NMSAREAIRN  180
PMCGHCGGAA VLGEISLEEH HLRIENSRLK DELDRICALA GKFITRSDDD PTGSHHLLPN  240
SALQLGVGTK NGYGGGGFTL VPPAGFEISS PFFSGLAAPV NRTTDVGTGL DQKSLYLELA  300
LTAMDELVKM AQTSEPLWIP SSKGKGEMLN REEYEKNFTP CLGPKPDGFV SEASKEVGVV  360
IINSLALVET LMDSERWAEM FPCMIARNST SEIISSGMGG TRNGALHLMQ AEIQLLSPLV  420
PVRQVTFLRF CKQHAEGVWA VVDVSVDRIS DRGGSASAHT SLSCRRLPSG CLVQDMPNGY  480
SKVTWIDHTE YDDTRIHNLY RPLVSSGLAF GSKRWISVLQ RQCESLTILM SSTIPNRDNT  540
TPISSIGKKS MLKLAQRMTQ KFCRGVCASS SQKWSKLEMG DIDEDVRIMT RKNVDDSGEP  600
PGILLSAATS VWVPVPPRQL FDFLRDELLR SEWDILSNGG PMQEIANIFK GQDQSNSVSL  660
LRSTAMNANQ SSMLILQETS IDASGAVVVY APVDIPAMHS VMKGADSAHV ALLPSGFGIL  720
PDDGQGMEET GSLLTVAFQI LVNSLPTAKL NVESIETVNN LISCTVQKIR AALRCDK*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10022677m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006293718.10.0homeobox-leucine zipper protein HDG1 isoform X2
SwissprotQ9M2E80.0HDG1_ARATH; Homeobox-leucine zipper protein HDG1
TrEMBLR0FVJ90.0R0FVJ9_9BRAS; Uncharacterized protein
STRINGXP_006293718.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]