PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10022676m
Common NameCARUB_v100226760mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HD-ZIP
Protein Properties Length: 784aa    MW: 85661.6 Da    PI: 5.1308
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10022676mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.77.4e-17106161156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++  ++++ q++ + ++++++++p++++r+eLA +l+Lt +q+k+WFqN+R++ k
  Carubv10022676m 106 KKRYNRHSPFQIKGMDTFYKECPHPDEKQRRELAYQLDLTPAQIKFWFQNKRTQIK 161
                      5677889*********************************************9988 PP
2START158.84.4e-503105311206
                      HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
            START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                      ela +a++el+++a+++ep+W+  +      ++ de+++ f+++ +     +++ea+r++g+v+m + + ve l+d+   W++++     +a t
  Carubv10022676m 310 ELAVRAMNELMLMAQVAEPLWTGGVngtsLHLDLDEYTRMFQKGLGpkvsgYRTEASRVTGLVPMIPINIVEMLMDSD-MWSTMFVgminRAIT 402
                      57899*****************999998778999999999977666999*****************************.******99999**** PP

                      EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE CS
            START  82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwve 168
                      +e+i ++      g+lq m+ae+q+ splv+ R ++f+Ry++q+g+  w++vd S+d+  ++       R++++pSg+li++ +ng+skvtwve
  Carubv10022676m 403 HEQIPTDvsgsynGVLQIMSAEYQVFSPLVStRQSYFARYCKQQGDNLWAVVDFSIDHFLPNIH----LRCRRRPSGCLIQEIPNGYSKVTWVE 492
                      *************************************************************985....************************** PP

                      -EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 169 hvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                      +v++++r   +++++++++sg+a++a++wvat++rqce+
  Carubv10022676m 493 NVEVDDRDAeQNMFKHFIRSGQAFAANRWVATMERQCER 531
                      ********999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.92E-1798167IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.5E-1899167IPR009057Homeodomain-like
PROSITE profilePS5007115.435103163IPR001356Homeobox domain
SMARTSM003891.6E-15104167IPR001356Homeobox domain
CDDcd000862.59E-15105164No hitNo description
PfamPF000462.6E-14106161IPR001356Homeobox domain
PROSITE patternPS000270138161IPR017970Homeobox, conserved site
PROSITE profilePS5084839.795301534IPR002913START domain
SuperFamilySSF559612.6E-31302533No hitNo description
CDDcd088753.43E-106305530No hitNo description
PfamPF018523.8E-42310531IPR002913START domain
SMARTSM002343.8E-42310531IPR002913START domain
Gene3DG3DSA:3.30.530.204.2E-5367495IPR023393START-like domain
SuperFamilySSF559615.95E-12587769No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 784 aa     Download sequence    Send to blast
MSESNMNNEN NDMNMYTDAG LNNTNGGADH VGGADAEGAN VGGAGVEGAA GVGADAEGAG  60
GVGADAEGAG VGGAGGVGAQ EMDDVNTERH DREEARGSNE SPPRKKKRYN RHSPFQIKGM  120
DTFYKECPHP DEKQRRELAY QLDLTPAQIK FWFQNKRTQI KNHQERIENT ELRKSNNNLR  180
DQNIGLREAV LIAVCPKCGG PTAIGDMCFE EHHLRNQNAR LQEEINQLSA LASSFANKQV  240
TMTKAISPPT PLPPLPSLPS LPPLPPHRPF EFEAGSSSST TQRDLYGSDG NLSMEIITGP  300
AEADKPMIIE LAVRAMNELM LMAQVAEPLW TGGVNGTSLH LDLDEYTRMF QKGLGPKVSG  360
YRTEASRVTG LVPMIPINIV EMLMDSDMWS TMFVGMINRA ITHEQIPTDV SGSYNGVLQI  420
MSAEYQVFSP LVSTRQSYFA RYCKQQGDNL WAVVDFSIDH FLPNIHLRCR RRPSGCLIQE  480
IPNGYSKVTW VENVEVDDRD AEQNMFKHFI RSGQAFAANR WVATMERQCE RIASIITTKF  540
QSVDSADHLV LTDHGKKSIL QLVERIARGF FIGLKNSMGT TFSGVAGDDI RVMTMKNMND  600
PGRPPGSVLA AASSFWVPVP PKTVFDFLRN EQNRPQWDVL FTGGNAQKIV EIANGRDSRN  660
CASLLRNANT FQNNMMVIQE TTTDPTASFV IYAPVETEAI EAVLNGGGDP DAVALLPCGF  720
AILPDGTVQP GGNAGGSLLT VAYQMLLETV PTDKLSVSSV ATVENLIRST VMNIKELFPY  780
QNP*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10022676m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006296541.10.0homeobox-leucine zipper protein HDG3
SwissprotQ9ZV650.0HDG3_ARATH; Homeobox-leucine zipper protein HDG3
TrEMBLR0HIB70.0R0HIB7_9BRAS; Uncharacterized protein
STRINGXP_006296541.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49128149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32370.10.0homeodomain GLABROUS 3
Publications ? help Back to Top
  1. Burkart-Waco D,Ngo K,Lieberman M,Comai L
    Perturbation of parentally biased gene expression during interspecific hybridization.
    PLoS ONE, 2015. 10(2): p. e0117293
    [PMID:25719202]