PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10022672m
Common NameCARUB_v10022672mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 788aa    MW: 89138.3 Da    PI: 7.815
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10022672mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3681.3e-21118208598
                      -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                       + +  ++++rl+lp +f++e+g++k++  ++ l  ++g +W  +l  + ++gr++l++GWk+FvkangLk+g++v+++l + +++++v++++ 
  Carubv10022672m 118 RLAPVDGRHCRLRLPMQFTRENGINKPG--KIYLLGKDGSKWLANLLSESNRGRMTLGDGWKSFVKANGLKTGESVTLRLYW-EDTTPVLSLCP 208
                      55667889***************99776..8***************999999***************************999.88889999885 PP
2B369.83.7e-22281371498
                      E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                        +++d lk+grl++p +f++e++++k++  ++tl  ++g +W   l    k+gr+ l+kGWkeF+kangLk+ D+++F+l++ +++++ +k++
  Carubv10022672m 281 LKITPDCLKHGRLRIPLQFMTENSMNKPG--EITLLGKDGAKWLASLL-LEKRGRMSLGKGWKEFAKANGLKTDDSITFELIW-ENATPILKLL 370
                      56789******************999766..8***************5.66667889**************************.7888888887 PP

                      - CS
               B3  98 r 98 
                      r
  Carubv10022672m 371 R 371
                      6 PP
3B3612e-19613702396
                      EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      + ++++d+l++grl+lp +f++e+g++k++  ++t+  ++g +W v l    ++gr  l+kGWk+ +k+ngLk+gD+++++ ++ +++++++k+
  Carubv10022672m 613 TLTITPDSLRQGRLRLPLEFMTENGMNKPG--EITVLGKDGVKWLVSL-LLERRGRLSLGKGWKDIAKENGLKTGDSITLESIW-EDASPMLKL 702
                      56789********************99766..8***************.56667899************************999.777788776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.2E-22108209IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-22113211IPR015300DNA-binding pseudobarrel domain
PfamPF023624.9E-21114208IPR003340B3 DNA binding domain
PROSITE profilePS5086314.804114210IPR003340B3 DNA binding domain
SMARTSM010193.6E-29114210IPR003340B3 DNA binding domain
CDDcd100177.79E-20124208No hitNo description
Gene3DG3DSA:2.40.330.106.3E-21271367IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-22274369IPR015300DNA-binding pseudobarrel domain
CDDcd100171.51E-19277371No hitNo description
PROSITE profilePS5086315.368278373IPR003340B3 DNA binding domain
SMARTSM010193.9E-31278373IPR003340B3 DNA binding domain
PfamPF023628.0E-22280371IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.1E-18605699IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-20607700IPR015300DNA-binding pseudobarrel domain
CDDcd100171.14E-16610703No hitNo description
PROSITE profilePS5086314.579611706IPR003340B3 DNA binding domain
SMARTSM010199.7E-27611706IPR003340B3 DNA binding domain
PfamPF023621.4E-18612702IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 788 aa     Download sequence    Send to blast
FDCSSSQNSL ILDSPINPEG DMMFQVADHQ DNNIEFQRNK KVKQNNHETE SDYSYALVRL  60
YYFDFCLVCS DLVYSPTQTK YLPQDLTSSN GLTRKCSKSP RQIFSSYSSS EKQFVTFRLA  120
PVDGRHCRLR LPMQFTRENG INKPGKIYLL GKDGSKWLAN LLSESNRGRM TLGDGWKSFV  180
KANGLKTGES VTLRLYWEDT TPVLSLCPEV YNTETRVGEE CLDASEKESF PIEPSSKVEI  240
IKDDINKDKN TKDESSSWER ENHHMRCMDS TSPSQNHILT LKITPDCLKH GRLRIPLQFM  300
TENSMNKPGE ITLLGKDGAK WLASLLLEKR GRMSLGKGWK EFAKANGLKT DDSITFELIW  360
ENATPILKLL RIESSYGRRE SGFSKESLTM EPNRGNKTKK ADNNREESKM YPPRCRESTT  420
TIQNQFMALT FTCNTISLGA HDPQTREAFI FRHEGDNMLH ISDLGHSCFG IRDVTAPSSK  480
NDHDRIGNIS MKMHPHLSQE AGFSSYDGDD HGNFEGPSKK VKKNNPETQE DYSSDHSRFV  540
TTSSLHANAL SLAVKESLPI KPSNVRKISE YDNNKDENSK EENNIEVSSS CEREKNHLRC  600
IASISPSQNR YVTLTITPDS LRQGRLRLPL EFMTENGMNK PGEITVLGKD GVKWLVSLLL  660
ERRGRLSLGK GWKDIAKENG LKTGDSITLE SIWEDASPML KLLHIESSSV SCFTDASSGH  720
KTREAENIRE ESSSSPKLKK RTYCPRKRDS SSDIQNRFLT LTLTHEDVRD GNLVSLLKHL  780
FALEVIS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10022672m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023639408.10.0B3 domain-containing protein REM-like 1 isoform X1
SwissprotQ8S8E80.0REML1_ARATH; B3 domain-containing protein REM-like 1
TrEMBLR0FUN00.0R0FUN0_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006293714.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150791619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24690.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]