PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10022595m
Common NameCARUB_v10022595mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Nin-like
Protein Properties Length: 936aa    MW: 103452 Da    PI: 5.424
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10022595mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK89.52.8e-28587637252
           RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                      ek++sl+ l+++Fs+++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rki+++
  Carubv10022595m 587 EKNVSLSILQQHFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKV 637
                      89***********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.688576657IPR003035RWP-RK domain
PfamPF020422.6E-27589637IPR003035RWP-RK domain
SuperFamilySSF542773.11E-23825921No hitNo description
Gene3DG3DSA:3.10.20.2401.0E-22834914No hitNo description
SMARTSM006662.2E-22835917IPR000270PB1 domain
PROSITE profilePS5174519.826835917IPR000270PB1 domain
CDDcd064076.12E-38836916No hitNo description
PfamPF005642.3E-17838915IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 936 aa     Download sequence    Send to blast
MENPFASREK GFGYQDIPTE QMDGLSTSFG SGLRNLISDD LLNSSSELMN FDSFAAWCNS  60
PSATDILFSQ YGLSTSQPMP FGAFTSIHAA DPKGTSLARS FHDLESSYFG EERSSVQDMS  120
SQLHSSLDSE ELSGKRRRVS NQKIGFPNVL DCTIPRSLSH SLDEKMLKAL SLFMESSGSG  180
EGILAQVWTP IKTGDQYVLS TCDQAYLLDP RLSQYREVSR KFTFAAEANH CSFPGLPGRV  240
FISGVPEWTS NVMYYKKDEY LRMKHAIDNE VRGSIAIPVL EESGTSCCAV MEFVTSKEKP  300
NFHMEMDSVC RALQAVNLRT SAIPRPQYLS TNQRDALAEI QDVLRAVCHA HKLPLAHTWI  360
PCRKDRSIRV SGPNSGENCV LCIEETACYV NDMEMEGFVN ACLEHCLREK EGIVGKAFIS  420
DQPFFSSDVK AYDISEYPLV QHARKYGLNA AVAIKLRSTY TGEDDYILEL FLPVSMKGSL  480
EQQLLLDSLS GTMQRICRTL RTVSEVRSTK KEVTKPGFRS GEISNFPQTT CSSNFLTTSL  540
DSEYHSTRSI FSGMSSDKDN GVTVSQGTLE QDMSKARTPE KKKSTTEKNV SLSILQQHFS  600
GSLKDAAKSL GVCPTTLKRI CRQHGIMRWP SRKINKVNRS LRKIQTVLDS VQGVDGGLKF  660
DSATGEFIAV GPFIQEFDTQ KGLSSHGNDA HARRSQEDMT DTDDTSFELQ EAKSVDNAVK  720
LEEDITMNQA IPGSFMEVNA SDQPWAWMAE QSSLNGSEGI KSVCNLSSLA LSDGMDPTIR  780
CNGSIVEPNH SLSCSISDSS NGSGAVMRGS SSTSVEDWNQ RRTQNNNSGE SGSTMLIVKA  840
TYREDTVRFK FEPSVGCPQL YKEVGKRFKL QDGSFQLKYL DDEEEWVMLV TDSDLQECLE  900
ILYGMGKHSV KFMVRDMPPP IGSSAGSNGY LGTCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134138KRRRV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10022595m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0023350.0AC002335.3 Arabidopsis thaliana chromosome 2 clone T1O24 map CIC10F02, complete sequence.
GenBankAY1025620.0AY102562.1 Arabidopsis thaliana hypothetical protein (At2g43500/T1O24.24) mRNA, complete cds.
GenBankAY1025630.0AY102563.1 Arabidopsis thaliana hypothetical protein (At2g43500/T1O24.24) mRNA, complete cds.
GenBankAY6492510.0AY649251.1 Arabidopsis thaliana hypothetical protein (At2g43500) gene, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023639704.10.0protein NLP8 isoform X1
SwissprotO228640.0NLP8_ARATH; Protein NLP8
TrEMBLR0FUG60.0R0FUG6_9BRAS; Uncharacterized protein
STRINGXP_006293639.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22992768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43500.20.0Nin-like family protein
Publications ? help Back to Top
  1. Yan D, et al.
    NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 13179
    [PMID:27731416]