PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10022595m | ||||||||
Common Name | CARUB_v10022595mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | Nin-like | ||||||||
Protein Properties | Length: 936aa MW: 103452 Da PI: 5.424 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 89.5 | 2.8e-28 | 587 | 637 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl+ l+++Fs+++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rki+++ Carubv10022595m 587 EKNVSLSILQQHFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKV 637 89***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.688 | 576 | 657 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.6E-27 | 589 | 637 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 3.11E-23 | 825 | 921 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 1.0E-22 | 834 | 914 | No hit | No description |
SMART | SM00666 | 2.2E-22 | 835 | 917 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 19.826 | 835 | 917 | IPR000270 | PB1 domain |
CDD | cd06407 | 6.12E-38 | 836 | 916 | No hit | No description |
Pfam | PF00564 | 2.3E-17 | 838 | 915 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 936 aa Download sequence Send to blast |
MENPFASREK GFGYQDIPTE QMDGLSTSFG SGLRNLISDD LLNSSSELMN FDSFAAWCNS 60 PSATDILFSQ YGLSTSQPMP FGAFTSIHAA DPKGTSLARS FHDLESSYFG EERSSVQDMS 120 SQLHSSLDSE ELSGKRRRVS NQKIGFPNVL DCTIPRSLSH SLDEKMLKAL SLFMESSGSG 180 EGILAQVWTP IKTGDQYVLS TCDQAYLLDP RLSQYREVSR KFTFAAEANH CSFPGLPGRV 240 FISGVPEWTS NVMYYKKDEY LRMKHAIDNE VRGSIAIPVL EESGTSCCAV MEFVTSKEKP 300 NFHMEMDSVC RALQAVNLRT SAIPRPQYLS TNQRDALAEI QDVLRAVCHA HKLPLAHTWI 360 PCRKDRSIRV SGPNSGENCV LCIEETACYV NDMEMEGFVN ACLEHCLREK EGIVGKAFIS 420 DQPFFSSDVK AYDISEYPLV QHARKYGLNA AVAIKLRSTY TGEDDYILEL FLPVSMKGSL 480 EQQLLLDSLS GTMQRICRTL RTVSEVRSTK KEVTKPGFRS GEISNFPQTT CSSNFLTTSL 540 DSEYHSTRSI FSGMSSDKDN GVTVSQGTLE QDMSKARTPE KKKSTTEKNV SLSILQQHFS 600 GSLKDAAKSL GVCPTTLKRI CRQHGIMRWP SRKINKVNRS LRKIQTVLDS VQGVDGGLKF 660 DSATGEFIAV GPFIQEFDTQ KGLSSHGNDA HARRSQEDMT DTDDTSFELQ EAKSVDNAVK 720 LEEDITMNQA IPGSFMEVNA SDQPWAWMAE QSSLNGSEGI KSVCNLSSLA LSDGMDPTIR 780 CNGSIVEPNH SLSCSISDSS NGSGAVMRGS SSTSVEDWNQ RRTQNNNSGE SGSTMLIVKA 840 TYREDTVRFK FEPSVGCPQL YKEVGKRFKL QDGSFQLKYL DDEEEWVMLV TDSDLQECLE 900 ILYGMGKHSV KFMVRDMPPP IGSSAGSNGY LGTCL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 134 | 138 | KRRRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10022595m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC002335 | 0.0 | AC002335.3 Arabidopsis thaliana chromosome 2 clone T1O24 map CIC10F02, complete sequence. | |||
GenBank | AY102562 | 0.0 | AY102562.1 Arabidopsis thaliana hypothetical protein (At2g43500/T1O24.24) mRNA, complete cds. | |||
GenBank | AY102563 | 0.0 | AY102563.1 Arabidopsis thaliana hypothetical protein (At2g43500/T1O24.24) mRNA, complete cds. | |||
GenBank | AY649251 | 0.0 | AY649251.1 Arabidopsis thaliana hypothetical protein (At2g43500) gene, complete cds. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023639704.1 | 0.0 | protein NLP8 isoform X1 | ||||
Swissprot | O22864 | 0.0 | NLP8_ARATH; Protein NLP8 | ||||
TrEMBL | R0FUG6 | 0.0 | R0FUG6_9BRAS; Uncharacterized protein | ||||
STRING | XP_006293639.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2299 | 27 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43500.2 | 0.0 | Nin-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10022595m |
Entrez Gene | 17887736 |
Publications ? help Back to Top | |||
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