PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10022457m | ||||||||
Common Name | CARUB_v10022457mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | TCP | ||||||||
Protein Properties | Length: 385aa MW: 40444.8 Da PI: 9.3633 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 126.5 | 2.8e-39 | 61 | 166 | 4 | 89 |
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas....nsssg.... 88 k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+++ ++s + +s +s + Carubv10022457m 61 VKKPSKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIASTGTGTIPANFStLNASLRGGGStlfsQS--Sksas 152 5899**********************************************************9999988752222222222222111..11123 PP TCP 89 .............k 89 + Carubv10022457m 153 splsfhstgmslyE 166 33333333333320 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.9E-36 | 65 | 180 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.031 | 65 | 119 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MELRTNQNSA AESTLQLNSG DKPSPGSIPF VGAMSTTTSS STSNSTSTSS GTALAVVKSA 60 VKKPSKDRHT KVDGRGRRIR MPAMCAARVF QLTRELGHKS DGETIEWLLQ QAEPAIIAST 120 GTGTIPANFS TLNASLRGGG STLFSQSSKS ASSPLSFHST GMSLYEDSNG TNGSSVDPSR 180 KLLNSAAAAA AQQNAAAVFG FHHQMYPPIM STERAPTNLV KPPYREDYFK EPSSGAEPSG 240 SSQKQGQFQD QELGPGRATA NVVPQPMWAV APGTTNGGSA FWMLPMSGSG GREQMQQQPA 300 HQMWAFNPGN YPVGSGRVVT APMGSMMLGG QQLGLGVAES NMAATMRGSR GDGLAMTLDQ 360 HQHQHQHQEP NQTQTSENGG DDKK* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00228 | DAP | Transfer from AT1G72010 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10022457m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC069273 | 0.0 | AC069273.4 Arabidopsis thaliana chromosome 1 BAC F28P5 genomic sequence, complete sequence. | |||
GenBank | AY080776 | 0.0 | AY080776.1 Arabidopsis thaliana unknown protein (At1g72010) mRNA, complete cds. | |||
GenBank | AY150488 | 0.0 | AY150488.1 Arabidopsis thaliana unknown protein (At1g72010) mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006301977.1 | 0.0 | transcription factor TCP22 | ||||
Swissprot | Q9C7G4 | 0.0 | TCP22_ARATH; Transcription factor TCP22 | ||||
TrEMBL | R0I9T3 | 0.0 | R0I9T3_9BRAS; Uncharacterized protein | ||||
STRING | XP_006301977.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7053 | 24 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72010.1 | 1e-174 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10022457m |
Entrez Gene | 17894142 |
Publications ? help Back to Top | |||
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