PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10022408m
Common NameCARUB_v10022408mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 151aa    MW: 16365.9 Da    PI: 4.9437
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10022408mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.27.2e-171363155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     s+ykG+r++k +g+Wv+eIr+p +   r+r +lg+f tae+Aa a++ a  +l+ 
  Carubv10022408m 13 SKYKGIRRRK-WGKWVSEIRVPGT---RQRLWLGSFSTAEGAAVAHDVAFYCLHR 63
                     89*****998.**********943...5*********************999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-171375IPR016177DNA-binding domain
PfamPF008471.3E-81361IPR001471AP2/ERF domain
CDDcd000181.87E-251377No hitNo description
SMARTSM003805.1E-271481IPR001471AP2/ERF domain
PROSITE profilePS5103220.8371475IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-241475IPR001471AP2/ERF domain
PRINTSPR003675.4E-91526IPR001471AP2/ERF domain
PRINTSPR003675.4E-93753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MDSSKDAGET YQSKYKGIRR RKWGKWVSEI RVPGTRQRLW LGSFSTAEGA AVAHDVAFYC  60
LHRPSSLDDE AFNFPHLLPT SLASNTSPKS IQKAASDAGM AVDAGFNLNN DGAASGSGGY  120
EGRSSTANMD DDNNDLSISV YDYLEDEVRF *
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10022408m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0161621e-115AC016162.5 Arabidopsis thaliana chromosome 1 BAC F3I17 genomic sequence, complete sequence.
GenBankAC0161631e-115AC016163.6 Arabidopsis thaliana chromosome 1 BAC F26A9 genomic sequence, complete sequence.
GenBankBT0109991e-115BT010999.1 Arabidopsis thaliana At1g71520 gene, complete cds.
GenBankBT0148161e-115BT014816.1 Arabidopsis thaliana At1g71520 gene, complete cds.
GenBankCP0026841e-115CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301935.11e-108ethylene-responsive transcription factor ERF020
SwissprotQ9C9I82e-83ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLR0IDS01e-107R0IDS0_9BRAS; Uncharacterized protein
STRINGXP_006301935.11e-108(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38652860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.17e-86ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]