PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10022368m | ||||||||
Common Name | CARUB_v10022368mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | C3H | ||||||||
Protein Properties | Length: 445aa MW: 47873.3 Da PI: 8.4704 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.2 | 9.8e-12 | 3 | 26 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 elCr+f+r G C+yG++C+F H++ Carubv10022368m 3 KELCRNFQR-GSCRYGENCRFLHPQ 26 69*******.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 4.8E-8 | 1 | 26 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 17.15 | 1 | 27 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.84E-6 | 2 | 25 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-8 | 3 | 26 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.6E-9 | 3 | 26 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005635 | Cellular Component | nuclear envelope | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MRKELCRNFQ RGSCRYGENC RFLHPQQAKP NNPFGFGSQS QQQPQHQQQQ QQKSSNPFGF 60 GVQSGGGGSS RPNQFQPFEN TWSRPASTPT GGASAQKTGK QAQPTDHKCT DPAACKRIMQ 120 DDFKNERPMW KLTCYGHWKY YPCDVTGDIS YEELRAIAYE EAKRGIPLQS IVERERNLQN 180 SKIAEFENFL RNPYKGSVTA NQSPFAATTP SIFPPTNQIS SSPPAFSGFN QQTAFPNTNA 240 GGLSSSGPPN AFASFSQQSN NQQTTFPNTN AGGVSSSGPP NPFASFNQQT NNQQTAFPNT 300 NVGGVSSSGP PNAFASSNQQ PNAFSVNTPQ PVSSGPSGFQ TNPSTLFKPA SFGPGPGLAT 360 APQNNNIFGR STPMPALNTS QNNQTAFNFN VPVASFTASA VDATNTSSGT ELQIEGEPVD 420 SSIWLKEKWN PGEIPEQAPP DAFV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10022368m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006301893.1 | 0.0 | zinc finger CCCH domain-containing protein 16 | ||||
Swissprot | Q9FWS3 | 0.0 | C3H16_ARATH; Zinc finger CCCH domain-containing protein 16 | ||||
TrEMBL | R0GGF7 | 0.0 | R0GGF7_9BRAS; Uncharacterized protein | ||||
STRING | XP_006301893.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10724 | 27 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75340.1 | 0.0 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10022368m |
Entrez Gene | 17895522 |