PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10022214m | ||||||||
Common Name | CARUB_v10022214mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | ERF | ||||||||
Protein Properties | Length: 258aa MW: 26714.9 Da PI: 4.6079 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52 | 1.8e-16 | 94 | 142 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r ++ +g+Wv+eIr+p++ ++r++lg++ t+e+Aa+a++ a+++l+g Carubv10022214m 94 LYRGIR-CR-SGKWVSEIREPKK---TTRVWLGTYPTPEMAAAAYDVAALALKG 142 69***9.55.6*********854...5***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.6E-10 | 93 | 142 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.02E-17 | 93 | 152 | No hit | No description |
SuperFamily | SSF54171 | 7.19E-18 | 94 | 152 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.941 | 94 | 150 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.1E-26 | 94 | 152 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.3E-28 | 94 | 156 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MGDPKNAITE PKAISQASSS SVTTIVPVRT CGDSLSDSAT CENPCPLDSI TSTTTTTTTT 60 VSFAAPCNST TTGNDIITLM ASDPDISRRK KHPLYRGIRC RSGKWVSEIR EPKKTTRVWL 120 GTYPTPEMAA AAYDVAALAL KGGDTVLNFP DSVGSYPIPL SSSAAHIRCA AAAAAAAAGA 180 CAATSAAAVK GGEKKEEEVC DGAGSSNTQF VDEEELLNMP GLLADMAKGM MVAPPWMGSP 240 PSDDSPENSD GERLWSY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10022214m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006301753.1 | 0.0 | ethylene-responsive transcription factor ERF026 | ||||
Swissprot | Q9CAN9 | 1e-111 | ERF26_ARATH; Ethylene-responsive transcription factor ERF026 | ||||
TrEMBL | R0GG54 | 0.0 | R0GG54_9BRAS; Uncharacterized protein | ||||
STRING | XP_006301753.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1957 | 27 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12630.1 | 6e-41 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10022214m |
Entrez Gene | 17894934 |