PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10022119m
Common NameCARUB_v10022119mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 241aa    MW: 26636.3 Da    PI: 10.4449
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10022119mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.8e-20103152255
              AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      g+ GVr ++ +grW AeIrd       r r++lg+f+taeeAa+a++aa+++l+g
  Carubv10022119m 103 GFMGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDAAARRLRG 152
                      789******.**********32....25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.1E-29103166IPR001471AP2/ERF domain
PfamPF008476.7E-14103152IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-20103160IPR016177DNA-binding domain
PROSITE profilePS5103221.377103160IPR001471AP2/ERF domain
CDDcd000181.98E-13104159No hitNo description
Gene3DG3DSA:3.30.730.101.2E-27104159IPR001471AP2/ERF domain
PRINTSPR003672.9E-9104115IPR001471AP2/ERF domain
PRINTSPR003672.9E-9126142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MENTFDGHLL KYSVPLSSML ETPQSFFGTA TKEPFNEATT SFDISSLFSS NPIPELHSSP  60
RVMDDSIAAV VGENVLFGDK FPATVTQGGG VKPWRKMSQK NGGFMGVRKR PWGRWSAEIR  120
DRIGRCRHWL GTFDTAEEAA RAYDAAARRL RGTKAKTNFV IPEEQIAAQT QSEENRRRKK  180
KTKKTENPSK CVHVTSVAQL FADANIIASS TSRHGNVTRP FNKLGKMGLE LDLKLSLGLC  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1685159171Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175183RRRKKKTKK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10022119m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0188482e-99AC018848.6 Arabidopsis thaliana chromosome 1 BAC F5I6 genomic sequence, complete sequence.
GenBankAC0188492e-99AC018849.2 Arabidopsis thaliana chromosome 1 BAC T21F11 genomic sequence, complete sequence.
GenBankAY5608442e-99AY560844.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g80580) mRNA, complete cds.
GenBankBT0260382e-99BT026038.1 Arabidopsis thaliana At1g80580 mRNA, complete cds.
GenBankCP0026842e-99CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankDQ4464462e-99DQ446446.1 Arabidopsis thaliana clone pENTR221-At1g80580 ethylene-responsive element-binding family protein (At1g80580) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301662.11e-180ethylene-responsive transcription factor ERF084
SwissprotQ9M8M51e-73ERF84_ARATH; Ethylene-responsive transcription factor ERF084
TrEMBLR0I8Z91e-179R0I8Z9_9BRAS; Uncharacterized protein
STRINGXP_006301662.11e-180(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.14e-74ERF family protein