PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10022064m | ||||||||
Common Name | CARUB_v10022064mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | TALE | ||||||||
Protein Properties | Length: 321aa MW: 36726.5 Da PI: 4.6668 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.6 | 5e-09 | 261 | 293 | 23 | 55 |
SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp++ ++ LA+++gL+++q+ +WF N+R ++ Carubv10022064m 261 PYPTEGDKIALAEETGLDQKQINNWFINQRKRH 293 8*****************************885 PP | |||||||
2 | ELK | 33.6 | 8.3e-12 | 213 | 234 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 +LK+qLlrK++++++sLk EFs Carubv10022064m 213 DLKDQLLRKFGSHISSLKLEFS 234 6********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 5.7E-20 | 70 | 114 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.1E-19 | 72 | 113 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.5E-24 | 122 | 173 | IPR005541 | KNOX2 |
Pfam | PF03791 | 9.5E-25 | 126 | 172 | IPR005541 | KNOX2 |
Pfam | PF03789 | 7.5E-9 | 213 | 234 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.935 | 213 | 233 | IPR005539 | ELK domain |
SMART | SM01188 | 4.2E-6 | 213 | 234 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.633 | 233 | 296 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.13E-19 | 234 | 305 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.1E-12 | 235 | 300 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-27 | 238 | 297 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.30E-11 | 242 | 297 | No hit | No description |
Pfam | PF05920 | 1.6E-17 | 253 | 292 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 271 | 294 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0010094 | Biological Process | specification of carpel identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MDRMCGFRST ADYSEKPALM MIPSDYQPLL CSSAGDNRQF VSDELATALS SERPSTAPRI 60 RKPEDNFSLG LIKSKIACHP LYPRLLQTYI DCQKVGAPME ITCILEEIQR ENDVYKKRDA 120 TLMACFGDDP DLDEFMETYC DILVKYKSDL ARPFDEATNF LNKIETQLQN LCIGPVSVTG 180 LSDDGMVSSD EELREDDDNV EAHESQQISN DRDLKDQLLR KFGSHISSLK LEFSKKKKKG 240 KLPREARQAL LDWWSVHYTW PYPTEGDKIA LAEETGLDQK QINNWFINQR KRHWKPSENM 300 PLAMMADSSE LLFTENEKET * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in meristem function, and may be involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10022064m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006301623.1 | 0.0 | homeobox protein knotted-1-like 2 isoform X1 | ||||
Swissprot | P46640 | 0.0 | KNAT2_ARATH; Homeobox protein knotted-1-like 2 | ||||
TrEMBL | R0GFW0 | 0.0 | R0GFW0_9BRAS; Uncharacterized protein | ||||
STRING | XP_006301623.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM835 | 27 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G70510.1 | 1e-176 | KNOTTED-like from Arabidopsis thaliana 2 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10022064m |
Entrez Gene | 17895163 |