PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10022061m
Common NameCARUB_v10022061mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 342aa    MW: 38592.4 Da    PI: 6.7413
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10022061mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.31.3e-52221501129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdeel+++yL+ k+ +  l    +i+evd++++ePw+Lp+++k +ekewyf+s rd+ky+tg r+nrat++gyWkatgkdkev++
  Carubv10022061m  22 LPPGFRFHPTDEELITFYLASKIFHGGLCG-IHISEVDLNRCEPWELPEMAKMGEKEWYFYSLRDRKYPTGLRTNRATTAGYWKATGKDKEVFA 114
                      79*************************877.78***************988999**************************************** PP

              NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                        +g lvg+kktLvfykgrap+g kt+Wvmheyrle
  Carubv10022061m 115 GgGGPLVGMKKTLVFYKGRAPRGLKTKWVMHEYRLE 150
                      866677****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-6217171IPR003441NAC domain
PROSITE profilePS5100558.57622171IPR003441NAC domain
PfamPF023651.1E-2623149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MMLAVEDVLS ELAGEEKNER GLPPGFRFHP TDEELITFYL ASKIFHGGLC GIHISEVDLN  60
RCEPWELPEM AKMGEKEWYF YSLRDRKYPT GLRTNRATTA GYWKATGKDK EVFAGGGGPL  120
VGMKKTLVFY KGRAPRGLKT KWVMHEYRLE TDLSHRHTCK EEWVICRVFN KTGDRKNVGI  180
HNQISYLHNQ TLSTAHHHHH HHHNHHHEAL PLLLESSNKT LNNFPSLLYE DTHQTYNNSL  240
LNGSSGHNLD ELKALINPVV SQLNGIIFSP GNNKEEDEFG FNLGVKTEPS SNGGNNNELD  300
VRDYLENPLF QEASYGLLGL SSSPGPLHML LDSPCPLGFQ L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-49151718168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10022061m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301620.10.0protein CUP-SHAPED COTYLEDON 3
SwissprotQ9S8510.0NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLR0ID000.0R0ID00_9BRAS; Uncharacterized protein
STRINGXP_006301620.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40028174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.10.0NAC family protein
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]