PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10022005m
Common NameCARUB_v10022005mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MIKC_MADS
Protein Properties Length: 257aa    MW: 30106.3 Da    PI: 8.5778
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10022005mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.17.5e-31959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+++fs++gkl+eys+
  Carubv10022005m  9 KRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYST 59
                     79***********************************************96 PP
2K-box107.41.6e-35791745100
            K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      +  + e+  + +++ e+++Lk++ie L+r+qRh+lGedL+ +s keLq+LeqqL+++lk+iRs+Kn+l++e+i++lq+kek++qe+n +L+k++
  Carubv10022005m  79 QLIAPESDVNTNWSMEYNRLKAKIELLERNQRHYLGEDLQAMSPKELQNLEQQLDTALKHIRSRKNQLMYESINDLQRKEKAIQEQNSMLSKQI 172
                      555556667889*********************************************************************************9 PP

            K-box  99 ee 100
                      +e
  Carubv10022005m 173 KE 174
                      87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.8E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.184161IPR002100Transcription factor, MADS-box
CDDcd002651.89E-42279No hitNo description
SuperFamilySSF554556.28E-34289IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003199.2E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-313859IPR002100Transcription factor, MADS-box
PfamPF014861.5E-3085172IPR002487Transcription factor, K-box
PROSITE profilePS5129716.96988178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009933Biological Processmeristem structural organization
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRAGLLK KAHEISVLCD AEVALVVFSH KGKLFEYSTD  60
SCMEKILERY ERYSYAERQL IAPESDVNTN WSMEYNRLKA KIELLERNQR HYLGEDLQAM  120
SPKELQNLEQ QLDTALKHIR SRKNQLMYES INDLQRKEKA IQEQNSMLSK QIKEREKILR  180
AQQEQWDQQN NGHNVPPPPP PQQHQIQHPY MLSHQPSPFL NMGGLYQEED PMAMRRNDLD  240
LSLEPVYNCN LGCFAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A7e-22174173MEF2 CHIMERA
6byy_B7e-22174173MEF2 CHIMERA
6byy_C7e-22174173MEF2 CHIMERA
6byy_D7e-22174173MEF2 CHIMERA
6bz1_A8e-22174173MEF2 CHIMERA
6bz1_B8e-22174173MEF2 CHIMERA
6bz1_C8e-22174173MEF2 CHIMERA
6bz1_D8e-22174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes early floral meristem identity in synergy with LEAFY. Displays a redundant function with CAULIFLOWER in the up-regulation of LEAFY. Required subsequently for the transition of an inflorescence meristem into a floral meristem, and for the normal development of sepals and petals in flowers. Regulates positively B class homeotic proteins (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00096ChIP-seqTransfer from AT1G69120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10022005m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5517600.0EU551760.1 Capsella bursa-pastoris APETALA1-like protein (AP1a) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301567.10.0floral homeotic protein APETALA 1
SwissprotP0DI140.0AP1_BRARP; Floral homeotic protein APETALA 1
TrEMBLR0I8Q60.0R0I8Q6_9BRAS; Uncharacterized protein
STRINGXP_006301567.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79225110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-164MIKC_MADS family protein