PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10021988m
Common NameCARUB_v10021988mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 333aa    MW: 36027.2 Da    PI: 4.3968
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10021988mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.37.1e-17116164254
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                      +  GVr++k +g+W+AeIr+p     +  r++lg+f+t e+Aaka++  + ++e
  Carubv10021988m 116 KPVGVRQRK-WGKWAAEIRHPI----SkNRIWLGTFDTLEDAAKAYDVKKIEFE 164
                      789*****9.**********72....359******************9988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.17E-21115163No hitNo description
SMARTSM003802.8E-17116177IPR001471AP2/ERF domain
PfamPF008474.6E-11116165IPR001471AP2/ERF domain
PROSITE profilePS5103219.177116173IPR001471AP2/ERF domain
PRINTSPR003671.9E-7117128IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-16118163IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.3E-22119165IPR001471AP2/ERF domain
PRINTSPR003671.9E-7139155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MVEVRKDQSL SGTTSVEMKK KQKRNTLSSL PQETQPLRKV RIIVNDPYAT DDSSSDEEEL  60
KVPKVRKVKR IVREINFPSM VVSEQPSESS SQDSTKTVSK KAASATPACP MVLTKKPVGV  120
RQRKWGKWAA EIRHPISKNR IWLGTFDTLE DAAKAYDVKK IEFEALAASV SVSGNASTKP  180
AVSSSETSQC SRSSPVAPVE QDETSASALT SVNTTVEVSK EVTTAPTPNA AAGGNKDLLF  240
DFDFTDLQIP DLGFFADGPN GNDLDFDCLL NDDQFDGFGL LDDIQGFEDD GPSELPDFDF  300
ADVEELADSS FGFLDQLAPL NIGCPLKSFA AS*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10021988m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301554.10.0ethylene-responsive transcription factor ERF118
RefseqXP_023644019.10.0ethylene-responsive transcription factor ERF118
SwissprotQ9CA271e-168EF118_ARATH; Ethylene-responsive transcription factor ERF118
TrEMBLR0GF660.0R0GF66_9BRAS; Uncharacterized protein
STRINGXP_006301554.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25372671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.23e-98ERF family protein
Publications ? help Back to Top
  1. Tran MK,Schultz CJ,Baumann U
    Conserved upstream open reading frames in higher plants.
    BMC Genomics, 2008. 9: p. 361
    [PMID:18667093]