PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10021893m
Common NameCARUB_v10021893mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family AP2
Protein Properties Length: 403aa    MW: 45649.1 Da    PI: 7.2953
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10021893mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.55.1e-11215271155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ + +Aa+a++ a++k++g
  Carubv10021893m 215 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDDEGKAARAYDLAALKYWG 271
                      78*******************77776664446666.6688857*************98 PP
2AP248.62.1e-15314365155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Carubv10021893m 314 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 365
                      78****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.35E-14215281IPR016177DNA-binding domain
CDDcd000188.76E-18215281No hitNo description
PfamPF008472.9E-7215271IPR001471AP2/ERF domain
SMARTSM003801.2E-21216285IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-12216280IPR001471AP2/ERF domain
PROSITE profilePS5103216.779216279IPR001471AP2/ERF domain
PRINTSPR003672.6E-6217228IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-18314374IPR016177DNA-binding domain
CDDcd000182.47E-24314375No hitNo description
PfamPF008473.0E-10314365IPR001471AP2/ERF domain
SMARTSM003801.2E-32315379IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-18315373IPR001471AP2/ERF domain
PROSITE profilePS5103219.072315373IPR001471AP2/ERF domain
PRINTSPR003672.6E-6355375IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MNKWLGFPLT PHLRICDREE ETDEEELRHD GSDVGRYNIN HDHHHHHEEE VPNSHQTEYP  60
MNHNQTNIDY TTVINGLYPP GYFFQEQTVV TPQYPNLSND YRDFERVGSV SDSKSWLRQG  120
TPTFPLSSSY VTEEGGTSSN ISHMSKEEST GLNTNGSTLS LALSQGACSD LINCSNVSMP  180
PVKVDEKRKR LDGKSQVVKE PVPRKSVDSF GQRTSQYRGV TRHRWTGRYE AHLWDNSCKK  240
EGQTRKGRQG GYDDEGKAAR AYDLAALKYW GPTTHLNFPV SNYEKEIEEL NNMNRQEFVA  300
MLRRNSSGFS RGASVYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA  360
IKFRGLNAVT NFDINRYDVK RICSSSAIAN SDQAKRDSTT GQ*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10021893m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4464220.0DQ446422.1 Arabidopsis thaliana clone pENTR221-At1g72570 ovule development protein (At1g72570) mRNA, complete cds.
GenBankDQ6529300.0DQ652930.1 Arabidopsis thaliana clone 0000013270_0000009577 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023643784.10.0AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE10.0AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLR0HWY20.0R0HWY2_9BRAS; Uncharacterized protein
STRINGXP_006301471.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117472532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.10.0AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]