PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10021514m
Common NameCARUB_v10021514mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 388aa    MW: 44389.7 Da    PI: 6.9309
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10021514mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.32.1e-51151421128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      l pGfrFhPtdeelv++yLk+kve+++l++ + i+++diyk++PwdLpk +  +ekewyf+++rd+ky++++r+nr+t +g+Wkatg+d++++s
  Carubv10021514m  15 LLPGFRFHPTDEELVSFYLKRKVENRPLSI-KLITQLDIYKYDPWDLPKFAMMGEKEWYFYCPRDRKYRNSTRPNRVTGAGFWKATGTDRPIYS 107
                      579***************************.89***************7666789*************************************** PP

              NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + +++ +gl+k+Lv+y+g+a kg ktdW+mhe+rl
  Carubv10021514m 108 SdGSKFIGLRKSLVYYSGKAAKGIKTDWMMHEFRL 142
                      956667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-588170IPR003441NAC domain
PROSITE profilePS5100557.20815170IPR003441NAC domain
PfamPF023653.7E-2517142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MGEINEEAMK MEDVLLPGFR FHPTDEELVS FYLKRKVENR PLSIKLITQL DIYKYDPWDL  60
PKFAMMGEKE WYFYCPRDRK YRNSTRPNRV TGAGFWKATG TDRPIYSSDG SKFIGLRKSL  120
VYYSGKAAKG IKTDWMMHEF RLPSTSSHTL GDTHHVSSND SWAICRILKK INTTAFRAIS  180
HSFVSSLPQD ESTHIKPYEK PSNTSQISSD KILQNSSCFK FYNEDMNVTQ PSSCFDHKEA  240
TKTSTCTTTS PFSYLDFSSS DSPGSRLDQQ HLRNLLLFPQ ETQPPQFPKF ITNYMISSTD  300
SSFLEEYTNH IGDLTSSVLA QEQCPALVSL PQEHHHETRF EENILSNTNP DHHALHHLPS  360
SNVGDQKHHS MLLDNYYSSL STSFSIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-5611721170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10021514m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893532e-91AC189353.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043L15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301116.10.0protein FEZ
SwissprotQ9ZVH01e-147FEZ_ARATH; Protein FEZ
TrEMBLR0HW280.0R0HW28_9BRAS; Uncharacterized protein
STRINGXP_006301116.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-147NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]