PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10020965m
Common NameCARUB_v10020965mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 204aa    MW: 22757.2 Da    PI: 4.1769
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10020965mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.38.9e-192171155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                     s+y+GVr +k +g+Wv+eIr p     +   r++lg+++t+e+Aa+a +aa  +l+g
  Carubv10020965m 21 SKYRGVRKRK-WGKWVSEIRLP-----HsrERIWLGSYDTPEKAARAFDAAQFCLRG 71
                     89*****999.**********7.....335*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.0E-122171IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-212180IPR016177DNA-binding domain
CDDcd000188.42E-302181No hitNo description
PROSITE profilePS5103222.2732279IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-292280IPR001471AP2/ERF domain
SMARTSM003809.2E-322285IPR001471AP2/ERF domain
PRINTSPR003673.8E-102334IPR001471AP2/ERF domain
PRINTSPR003673.8E-104561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0002213Biological Processdefense response to insect
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009611Biological Processresponse to wounding
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MVKQAKATKE EEKNRNTAMQ SKYRGVRKRK WGKWVSEIRL PHSRERIWLG SYDTPEKAAR  60
AFDAAQFCLR GGDADFNFPD NPPSISGGMS LTPPEIQEAA ARFANDTTTQ DNVVVLVKGE  120
EEDEEESGLV PGSEIRPESP STSASVATST LDFDLSFFDL LPMDFGIFPG FDDFSGDRFT  180
EILPIEDYEG ESLLDESLLL WDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1518871080Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00601PBMTransfer from AT1G74930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10020965m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0132584e-97AC013258.5 Arabidopsis thaliana chromosome 1 BAC F9E10 genomic sequence, complete sequence.
GenBankAY1283094e-97AY128309.1 Arabidopsis thaliana AP2 domain containing protein, putative (At1g74930) mRNA, complete cds.
GenBankBT0033484e-97BT003348.1 Arabidopsis thaliana AP2 domain containing protein, putative (At1g74930) mRNA, complete cds.
GenBankCP0026844e-97CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF25A44e-97AC008263.2 Arabidopsis thaliana chromosome 1 BAC F25A4 sequence, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302833.11e-148ethylene-responsive transcription factor ERF018
SwissprotQ9S7L51e-110ERF18_ARATH; Ethylene-responsive transcription factor ERF018
TrEMBLR0GJ161e-146R0GJ16_9BRAS; Uncharacterized protein
STRINGXP_006302833.11e-147(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16142890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.17e-77ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen HY, et al.
    ORA47 (octadecanoid-responsive AP2/ERF-domain transcription factor 47) regulates jasmonic acid and abscisic acid biosynthesis and signaling through binding to a novel cis-element.
    New Phytol., 2016. 211(2): p. 599-613
    [PMID:26974851]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]