PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10020960m | ||||||||
Common Name | CARUB_v10020960mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | ERF | ||||||||
Protein Properties | Length: 206aa MW: 22449.8 Da PI: 5.3469 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.3 | 9e-19 | 41 | 90 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ykGVr++ +g+WvAeIr+p + r +r +lg+f+t eAa a++ a++kl+g Carubv10020960m 41 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTSREAALAYDSAARKLYG 90 69****999.**********8...3.35*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.22E-30 | 40 | 100 | No hit | No description |
SuperFamily | SSF54171 | 1.9E-21 | 41 | 100 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.983 | 41 | 98 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.5E-14 | 41 | 90 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-34 | 41 | 104 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-30 | 41 | 99 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.1E-10 | 42 | 53 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.1E-10 | 64 | 80 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MSSIEPKVMM VGANKKQRTV QASSRKGCMR GKGGPDNASC TYKGVRQRTW GKWVAEIREP 60 NRGARLWLGT FDTSREAALA YDSAARKLYG PEAHLNLPES LRSYPETASS QASQTAPSSN 120 TGGKSSDSES PCSSNEMSLC GRVAEEISWE HINVDLPVMD DSSIWEEATI SLGFPWVNEG 180 DNDISRFDTC ISGGYSNWDS FHSPL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 9e-18 | 42 | 98 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00240 | DAP | Transfer from AT1G75490 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10020960m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC006434 | 0.0 | AC006434.5 Genomic sequence for Arabidopsis thaliana BAC F10A5, complete sequence. | |||
GenBank | AC023754 | 0.0 | AC023754.3 Arabidopsis thaliana chromosome I BAC F1B16 genomic sequence, complete sequence. | |||
GenBank | AK119132 | 0.0 | AK119132.1 Arabidopsis thaliana mRNA for unknown protein, complete cds, clone: RAFL21-48-H08. | |||
GenBank | AK175902 | 0.0 | AK175902.1 Arabidopsis thaliana mRNA for transcription factor DREB2A like protein, complete cds, clone: RAFL22-54-M24. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006302829.1 | 1e-152 | dehydration-responsive element-binding protein 2D | ||||
Swissprot | Q9LQZ2 | 1e-137 | DRE2D_ARATH; Dehydration-responsive element-binding protein 2D | ||||
TrEMBL | R0GIK8 | 1e-150 | R0GIK8_9BRAS; Uncharacterized protein | ||||
STRING | XP_006302829.1 | 1e-151 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5399 | 26 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75490.1 | 1e-127 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10020960m |
Entrez Gene | 17896573 |
Publications ? help Back to Top | |||
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