PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10020812m
Common NameCARUB_v10020812mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 263aa    MW: 29115.3 Da    PI: 4.8872
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10020812mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.3e-1973124156
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                      s+y+G+r+++ +grW+AeIrdp     +  r++lg+f tae+Aa+a++  +k+++g+
  Carubv10020812m  73 SRYRGIRRRP-WGRWAAEIRDPI----KgVRVWLGTFNTAEDAARAYDLEAKRIRGA 124
                      79********.**********72....46*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-1273123IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-2273132IPR016177DNA-binding domain
CDDcd000181.21E-3173132No hitNo description
Gene3DG3DSA:3.30.730.107.5E-3174132IPR001471AP2/ERF domain
SMARTSM003805.0E-3674137IPR001471AP2/ERF domain
PROSITE profilePS5103224.2174131IPR001471AP2/ERF domain
PRINTSPR003673.0E-117586IPR001471AP2/ERF domain
PRINTSPR003673.0E-1197113IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0034059Biological Processresponse to anoxia
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MCGGAVISDY ITPSRSDQDN TGRGRKSSWT SKAVFDCSID DFNGDFEEFE PDLSSTRKRA  60
SGSALDGRKK QSSRYRGIRR RPWGRWAAEI RDPIKGVRVW LGTFNTAEDA ARAYDLEAKR  120
IRGAKAKLNF PNESFKKRKD VAKTVQLIEE KKHGADLGLA VASSVPSSSH TDFLWEENNA  180
DTLLIDTQWL EDVIMGDAKK KQETNGSEEE GNVNATLLSE ELLAFENQTE CFSQIPFMEG  240
GCDSLTSLSS LLGGDNNIDL WS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2175131360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00230DAPTransfer from AT1G72360Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10020812m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302701.10.0ethylene-responsive transcription factor ERF073
SwissprotQ8H0T51e-103ERF73_ARATH; Ethylene-responsive transcription factor ERF073
TrEMBLR0I0A10.0R0I0A1_9BRAS; Uncharacterized protein
STRINGXP_006302701.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137371625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.21e-102ERF family protein
Publications ? help Back to Top
  1. Yang CY,Huang YC,Ou SL
    ERF73/HRE1 is involved in H2O2 production via hypoxia-inducible Rboh gene expression in hypoxia signaling.
    Protoplasma, 2017. 254(4): p. 1705-1714
    [PMID:27995331]